Search result

BaseInfo

ncRNA ID	novel_osa_miR2992
Species	Oryza sativa
Class	miRNA
Genome position	Chr7:17554691-17554871 [+]
Reference genome	IRGSP-1.0
Source	SRR2040383
Length	22
Mature sequence(if miRNA)	160 - UUAAAACAAUUUGACUUUGACU - 181
Stem-loop(if miRNA)	--           C  C     AUUUAAC          UAU   U            AUAAUACCAAA       -CAU     CAAUAAU    UA   UCAAAGUCAAA UG UUUAA       UAAGUUUAUG   AAA AUAGUAAUAUUU           UUAGUUU    UAAAU       UGAA  U   ||||||||||| || |||||       ||||||||||   ||| ||||||||||||           |||||||    |||||       ||||   AGUUUCAGUUU AC AAAUU       GUUCAAAUAU   UUU UAUUAUUAUAAA           AGUCGAA    GUUUA       ACUU  A UC           A  A     CACACUA          --U   U            -----------       UUGU     -AAUAAU    UU
Stem-loop sequence	UCAAAGUCAAACUGCUUUAAAUUUAACUAAGUUUAUGUAUAAAUAUAGUAAUAUUUAUAAUACCAAAUUAGUUUCAUUAAAUCAAUAAUUGAAUAUAUUUUCAUAAUAAAUUUGUGUUAAGCUGAAAAUAUUAUUAUUUUUUUAUAAACUUGAUCACACUUAAAACAAUUUGACUUUGACU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
AK120395.1	ncRNA:22   UCAGUUUCAGUUUAACAAAAUU   1   =||||||||||||||||||||| targets:730   GGUCAAAGUCAAAUUGUUUUAA   751 Target Full Sequence	0.0	Oryza sativa Japonica Group cDNA clone:J013075G01, full insert sequence	NA	coding protein	psRNATarget
XM_015755259.1	ncRNA:22   UCAGUUUCAGUUUAACAAAAUU   1   =||||||||||||*|||||||| targets:809   GGUCAAAGUCAAACUGUUUUAA   830 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4346670 (LOC4346670), transcript variant X3, mRNA	uncharacterized LOC4346670(LOC4346670)	coding protein	psRNATarget
AK288811.1	ncRNA:22   UCAGUUUCAGUUUAACAAAAUU   1   |||=||||||||||||*||||| targets:1665   AGUUAAAGUCAAAUUGCUUUAA   1686 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J090072B06, full insert sequence	NA	coding protein	psRNATarget
AK243096.1	ncRNA:22   UCAGUUUCAGUUUAACAAAAUU   1   =||||||||||||||||||*|| targets:1829   GGUCAAAGUCAAAUUGUUUCAA   1850 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA, clone: J100024A13, full insert sequence	NA	coding protein	psRNATarget
XM_015756152.1	ncRNA:22   UCAGUUUCAGUUUAACAAAAUU   1   =||||||||||||||||||*|| targets:1800   GGUCAAAGUCAAAUUGUUUCAA   1821 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group basic blue protein (LOC4347927), mRNA	basic blue protein(LOC4347927)	coding protein	psRNATarget
AK067908.1	ncRNA:22   UCAGUUUCAGUUUAACAAAAUU   1   **|||||||||||*|||||||| targets:1682   UUUCAAAGUCAAAAUGUUUUAA   1703 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA clone:J013126N07, full insert sequence	NA	coding protein	psRNATarget
XM_015795749.1	ncRNA:22   UCAGUUUCAGUUUAACAAAAUU   1   **|||||||||||*|||||||| targets:1829   UUUCAAAGUCAAAAUGUUUUAA   1850 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group hexose carrier protein HEX6 (LOC4346567), mRNA	hexose carrier protein HEX6(LOC4346567)	coding protein	psRNATarget
AK288873.1	ncRNA:22   UCAGUUUCAGUUUAACAAAAUU   1   =*|||||*|||||||||||||| targets:7112   GAUCAAACUCAAAUUGUUUUAA   7133 Target Full Sequence	1.0	Oryza sativa Japonica Group cDNA, clone: J090078I24, full insert sequence	NA	coding protein	psRNATarget
CT837874.1	ncRNA:22   UCAGUUUCAGUUUAACAAAAUU   1   =||*|||||||||*|||||||| targets:148   GGUGAAAGUCAAACUGUUUUAA   169 Target Full Sequence	2.5	Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSN062A18, full insert sequence	NA	coding protein	psRNATarget
AK288635.1	ncRNA:22   UCAGUUUCAGUUUAACAAAAUU   1   =||||||*|||||*|||||||| targets:405   GGUCAAAAUCAAACUGUUUUAA   426 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J090055J05, full insert sequence	NA	coding protein	psRNATarget
AK288440.1	ncRNA:22   UCAGUUUCAGUUUAACAAAAUU   1   =||||||*|||||*|||||||| targets:1210   GGUCAAAAUCAAACUGUUUUAA   1231 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J090034G20, full insert sequence	NA	coding protein	psRNATarget