Search result

BaseInfo

ncRNA ID	novel_osa_miR2990
Species	Oryza sativa
Class	miRNA
Genome position	Chr7:554730-554857 [-]
Reference genome	IRGSP-1.0
Source	SRR1555747;SRR1556020
Length	24
Mature sequence(if miRNA)	105 - AAAUUUGUAGAAAAAAGUAGUGAC - 128
Stem-loop(if miRNA)	--AAA  UG    A   A       C    -    -      CAAA       UAAA    UAUA      UU  UAGA AAA GUAGUGA AUUU UAAU CUAAGA    UUUAUUA    AAUA    U      ||  |||| ||| ||||||| |||| |||| ||||||    |||||||    ||||      AA  AUCU UUU UAUCAUU UAAA AUUA GAUUUU    AAGUAGU    UUAU    U GAUUC  GU    G   A       A    U    U      AUCA       UUAG    UAAC
Stem-loop sequence	AAAUUUGUAGAAAAAAGUAGUGACAUUUUAAUCUAAGACAAAUUUAUUAUAAAAAUAUAUAUUCAAUUAUUGAUUUGAUGAAACUAUUUUAGUAUUAUAAAUAUUACUAUAUUUGUCUAUGAACUUAG

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
AK288396.1	ncRNA:24   CAGUGAUGAAAAAAGAUGUUUAAA   1   ||=||||||||||||||||||||| targets:544   GUUACUACUUUUUUCUACAAAUUU   567 Target Full Sequence	0.0	Oryza sativa Japonica Group cDNA, clone: J090027N23, full insert sequence	NA	coding protein	psRNATarget
XM_015773578.1	ncRNA:24   CAGUGAUGAAAAAAGAUGUUUAAA   1   ||=||||=|||||||||=|||||| targets:425   GUUACUAUUUUUUUCUAUAAAUUU   448 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group putative F-box protein At2g02030 (LOC9271925), transcript variant X3, mRNA	putative F-box protein At2g02030(LOC9271925)	coding protein	psRNATarget
XM_015786541.1	ncRNA:24   CAGUGAUGAAAAAAGAUGUUUAAA   1   ||=||||=|||||||||=|||||| targets:1   GUUACUAUUUUUUUCUAUAAAUUU   24 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC9266053 (LOC9266053), mRNA	uncharacterized LOC9266053(Os06g0243250)	coding protein	psRNATarget
XM_015788305.1	ncRNA:24   CAGUGAUGAAAAAAGAUGUUUAAA   1   ||=|||||*||||||||||||*|| targets:1417   GUUACUACCUUUUUCUACAAACUU   1440 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group F-box/FBD/LRR-repeat protein At1g13570 (LOC4340210), transcript variant X1, mRNA	F-box/FBD/LRR-repeat protein At1g13570(LOC4340210)	coding protein	psRNATarget
AK242901.1	ncRNA:24   CAGUGAUGAAAAAAGAUGUUUAAA   1   ||=|||||*||||||||||||*|| targets:1367   GUUACUACCUUUUUCUACAAACUU   1390 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J090081L24, full insert sequence	NA	coding protein	psRNATarget
AK121032.1	ncRNA:24   CAGUGAUGAAAAAAGAUGUUUAAA   1   ||=|*|||*||||||||=|||||| targets:2053   GUUAGUACAUUUUUCUAUAAAUUU   2076 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:J023050J15, full insert sequence	NA	coding protein	psRNATarget
CT836717.1	ncRNA:24   CAGUGAUGAAAAAAGAUGUUUAAA   1   ||=--||=||||||=||||||||| targets:874   GUU--UAUUUUUUUUUACAAAUUU   895 Target Full Sequence	2.5	Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA108F23, full insert sequence	NA	coding protein	psRNATarget
AK111347.1	ncRNA:24   CAGUGAUGAAAAAAGAUGUUUAAA   1   ||-|=||=|||||||||||*|||| targets:583   GU-AUUAUUUUUUUCUACAUAUUU   605 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:002-181-G03, full insert sequence	NA	coding protein	psRNATarget
XM_015762558.1	ncRNA:24   CAGUGAUGAAAAAAGAUGUUUAAA   1   ||-|=||=|||||||||||*|||| targets:595   GU-AUUAUUUUUUUCUACAUAUUU   617 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4350725 (LOC4350725), mRNA	uncharacterized LOC4350725(LOC4350725)	coding protein	psRNATarget
CT833122.1	ncRNA:24   CAGUGAUGAAAAAAGAUGUUUAAA   1   **=|*||=|||||||||=|||||| targets:616   UAUAAUAUUUUUUUCUAUAAAUUU   639 Target Full Sequence	2.5	Oryza sativa (indica cultivar-group) cDNA clone:OSIGCPI102E03, full insert sequence	NA	coding protein	psRNATarget
CT837452.1	ncRNA:24   CAGUGAUGAAAAAAGAUGUUUAAA   1   **=*=||=||||||=||||||||| targets:1129   UCUUUUAUUUUUUUUUACAAAUUU   1152 Target Full Sequence	2.5	Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA122H03, full insert sequence	NA	coding protein	psRNATarget
AK059976.1	ncRNA:24   CAGU-------GAUGAAAAAAGAUGUUUAAA   1   *|||-------=||*||||||=||||||||| targets:898   CUCAACAAAAUUUAAUUUUUUUUACAAAUUU   928 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:006-212-A10, full insert sequence	NA	coding protein	psRNATarget