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BaseInfo

ncRNA ID	novel_osa_miR2980
Species	Oryza sativa
Class	miRNA
Genome position	Chr6:9321678-9321844 [+]
Reference genome	IRGSP-1.0
Source	SRR2040383;SRR2040405;SRR2040409
Length	24
Mature sequence(if miRNA)	1 - AGUUUUUGUUUGCACUGUUUGACC - 24
Stem-loop(if miRNA)	--            CAC                        U      ---     UUAUUUUUUUUACUUACUUUAUUAUCCCA   AGUUUUUGUUUG   UGUUUGACCACUCGUCUUAUUCAA AAAUUU   UGGAA                             A   ||||||||||||   |||||||||||||||||||||||| ||||||   |||||   UCAAAAACAAAC   ACAAACUGGUGAGUAGAAUAAGUU UUUAAA   GUUUA                             G AU            AUA                        U      UAC     UAUUUUUCGUUUUUCAAUACGAAUUUCAU
Stem-loop sequence	AGUUUUUGUUUGCACUGUUUGACCACUCGUCUUAUUCAAUAAAUUUUGGAAUUAUUUUUUUUACUUACUUUAUUAUCCCAAGUACUUUAAGCAUAACUUUUUGCUUUUUAUAUUUGCAUAAAUUUUUUGAAUAAGAUGAGUGGUCAAACAAUACAAACAAAAACUUA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
CT837708.1	ncRNA:24   CCAGUUUGUCACGUUUGUUUUUGA   1   |||||||||||||||=|||||||| targets:674   GGUCAAACAGUGCAAGCAAAAACU   697 Target Full Sequence	1.5	Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA220M04, full insert sequence	NA	coding protein	psRNATarget
AK288595.1	ncRNA:24   CCAGUUUGUCACGUUUGUUUUUGA   1   ||||||||=||||||=|||||||| targets:815   GGUCAAACGGUGCAAGCAAAAACU   838 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J090051J16, full insert sequence	NA	coding protein	psRNATarget
XM_015790568.1	ncRNA:24   CCAGUUUGUCACGUUUGUUUUUGA   1   ||||||||=||||||=|||||||| targets:876   GGUCAAACGGUGCAAGCAAAAACU   899 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC107277036 (LOC107277036), mRNA	uncharacterized LOC107277036(Os07g0616850)	coding protein	psRNATarget
AK288846.1	ncRNA:24   CCAGUUUGUCACGUUUGUUUUUGA   1   |*|||||||||||||=|||||||| targets:63   GAUCAAACAGUGCAAGCAAAAACU   86 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA, clone: J090075E22, full insert sequence	NA	coding protein	psRNATarget
AK288977.1	ncRNA:24   CCAGUUUGUCACGUUUGUUUUUGA   1   |||||||||*|*|||||||||||| targets:1829   GGUCAAACAAUACAAACAAAAACU   1852 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J090085K17, full insert sequence	NA	coding protein	psRNATarget