ncRNA ID | novel_osa_miR2978 |
Species | Oryza sativa |
Class | miRNA |
Genome position | Chr6:1042967-1043186 [+] |
Reference genome | IRGSP-1.0 |
Source | SRR1298758;SRR1300837 |
Length | 24 |
Mature sequence(if miRNA) | 1 - AAUUGAGAAGAUGUAUUAACAUGA - 24 |
Stem-loop(if miRNA) |
--         G         C   A  UCA                       G            A  U                   A    -------     CAACA  UAG   AAUUGAGAA AUGUAUUAA AUG GA   UAUAUCACUCUAUAAAUAUGCAA UUCAAAUUCAAC UC AUAUCUCGUAACGAAAAAA CAAA       GUAAA     GC   U   ||||||||| ||||||||| ||| ||   ||||||||||||||||||||||| |||||||||||| || ||||||||||||||||||| ||||       |||||     ||   UUAAUUCUU UACAUAAUU UAC CU   AUAUAGUGAGGUGUUUGUACGUU AAGUUUAAGUUG AG UGUAGAGCAUUGCUUUUUU GUUU       CAUUU     CG   U UU         A         A   A  ---                       A            A  -                   -    AAACUGA     --AUA  CAA |
Stem-loop sequence | AAUUGAGAAGAUGUAUUAACAUGAGAUCAUAUAUCACUCUAUAAAUAUGCAAGUUCAAAUUCAACAUCUAUAUCUCGUAACGAAAAAAACAAAGUAAACAACAGCUAGUUAACGCAUAUUUACAGUCAAAUUUGUUUUUUCGUUACGAGAUGUGAAGUUGAAUUUGAAAUUGCAUGUUUGUGGAGUGAUAUAUCACAUAUUAAUACAUAUUCUUAAUUUU |