Search result

BaseInfo

ncRNA ID	novel_osa_miR2965
Species	Oryza sativa
Class	miRNA
Genome position	Chr4:21914520-21914743 [+]
Reference genome	IRGSP-1.0
Source	SRR2040383;SRR2040386;SRR2040387;SRR2040390;SRR2040392;SRR2040394;SRR2040395;SRR2040401;SRR2040402;SRR2040403;SRR2040407;SRR2040410;SRR2857731;SRR3123648;SRR1738235
Length	24
Mature sequence(if miRNA)	201 - AAUCUAUGUUUAAUACUCUAAAUU - 224
Stem-loop(if miRNA)	--A     A                            U   U     UUCU   -      C           C A      C         C         C     GAUGC    UUAGA GUAUUAAAUAUAGAUUAAUGAUAAAACU AUU CAUAA    AGA CUAAUU GCGAGACGGAU U UUGAGC UAAUUAAUC AUGAUUAGC UAUGU     U    ||||| |||||||||||||||||||||||||||| ||| |||||    ||| |||||| ||||||||||| | |||||| ||||||||| ||||||||| |||||     A    AAUCU CAUAAUUUGUAUCUAAUUAUUAUUUUGA UAA GUAUU    UCU GAUUAA CGCUCUGUUUA A GAUUCG GUUAAUUAG UAUUAAUCG GUAUA     U UUA     -                            U   C     -UAC   C      U           A A      U         A         U     AAUAA
Stem-loop sequence	AUUAGAAGUAUUAAAUAUAGAUUAAUGAUAAAACUUAUUUCAUAAUUCUAGACUAAUUCGCGAGACGGAUCUAUUGAGCCUAAUUAAUCCAUGAUUAGCCUAUGUGAUGCUAUAAUAAAUAUGUGCUAAUUAUAGAUUAAUUGUGCUUAGAAAAUUUGUCUCGCUAAUUAGCUCUCAUUUAUGCAAUUAGUUUUAUUAUUAAUCUAUGUUUAAUACUCUAAAUU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_015781196.1	ncRNA:24   UUAAAUCUCAUAAUUUGUAUCUAA   1   ||||||||||||||||||||||*| targets:2009   AAUUUAGAGUAUUAAACAUAGACU   2032 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group GATA transcription factor 6 (LOC4336532), mRNA	GATA transcription factor 6(LOC4336532)	coding protein	psRNATarget
AK288948.1	ncRNA:24   UUAAAUCUCAUAAUUUGUAUCUAA   1   ||||||||||||||||||||||*| targets:2591   AAUUUAGAGUAUUAAACAUAGACU   2614 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA, clone: J090083I09, full insert sequence	NA	coding protein	psRNATarget
AK288241.1	ncRNA:24   UUAAAUCUCAUAAUUUGUAUCUAA   1   ||||||||||||||||||||||*| targets:529   AAUUUAGAGUAUUAAACAUAGACU   552 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA, clone: J090013L13, full insert sequence	NA	coding protein	psRNATarget
AK100185.1	ncRNA:24   UUAAAUCUCAUAAUUUGUAUCUAA   1   |||||=||||||||||||||*||| targets:667   AAUUUGGAGUAUUAAACAUACAUU   690 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:J023031M16, full insert sequence	NA	coding protein	psRNATarget
AK102033.1	ncRNA:24   UUAAAUCUCAUAAUUUGUAUCUAA   1   |||||=||||||||||||||||*| targets:287   AAUUUGGAGUAUUAAACAUAGACU   310 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:J033081B10, full insert sequence	NA	coding protein	psRNATarget
AK240978.1	ncRNA:24   UUAAAUCUCAUAAUUUGUAUCUAA   1   ||||-|||||=|||||||||||*| targets:353   AAUU-AGAGUGUUAAACAUAGACU   375 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J065048J02, full insert sequence	NA	coding protein	psRNATarget