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BaseInfo

ncRNA ID	novel_osa_miR2962
Species	Oryza sativa
Class	miRNA
Genome position	Chr3:4861513-4861683 [-]
Reference genome	IRGSP-1.0
Source	SRR2040383
Length	22
Mature sequence(if miRNA)	150 - UUUUUGAUUGUAACGUUUGACC - 171
Stem-loop(if miRNA)	--      AU                             UU        C    AUAAAAAAUAAAAAG     UUUAAAG      A   UUUUUG  UGUAACGUUUGACCACUCGUCUUAUUCAG  UUUUUUUG AAAU               UUGUG       UACUGU G   ||||||  |||||||||||||||||||||||||||||  |||||||| ||||               |||||       |||||| A   AAAAAU  ACAUUGCAAACUGGUGAGCAGAAUAAGUU  AAAAAAAC UUUA               AACAC       AUGAUA U UC      GU                             -U        -    AUAAUAAAUAAAAUA     ----UGA      A
Stem-loop sequence	UUUUUGAUUGUAACGUUUGACCACUCGUCUUAUUCAGUUUUUUUUUGCAAAUAUAAAAAAUAAAAAGUUGUGUUUAAAGUACUGUAGAUAAUAGUAAGUCACAAAUAAAAUAAAUAAUAAUUUCAAAAAAAUUUGAAUAAGACGAGUGGUCAAACGUUACAUGUAAAAACU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
HI403666.1	ncRNA:22   CCAGUUUGCAAUGUUAGUUUUU   1   |||||||||||||||*|||||| targets:153   GGUCAAACGUUACAAACAAAAA   174 Target Full Sequence	1.5	Sequence 1791 from Patent EP2074227	NA	coding protein	psRNATarget
JB164127.1	ncRNA:22   CCAGUUUGCAAUGUUAGUUUUU   1   |||||||||||||||*|||||| targets:153   GGUCAAACGUUACAAACAAAAA   174 Target Full Sequence	1.5	Sequence 1791 from Patent EP2559767	NA	coding protein	psRNATarget
LQ235796.1	ncRNA:22   CCAGUUUGCAAUGUUAGUUUUU   1   |||||||||||||||*|||||| targets:153   GGUCAAACGUUACAAACAAAAA   174 Target Full Sequence	1.5	Sequence 1791 from Patent EP2985353	NA	coding protein	psRNATarget
HI404009.1	ncRNA:22   CCAGUUUGCAAUGUUAGUUUUU   1   |||||||||||||||*|||||| targets:156   GGUCAAACGUUACAAACAAAAA   177 Target Full Sequence	1.5	Sequence 2134 from Patent EP2074227	NA	coding protein	psRNATarget
JB164470.1	ncRNA:22   CCAGUUUGCAAUGUUAGUUUUU   1   |||||||||||||||*|||||| targets:156   GGUCAAACGUUACAAACAAAAA   177 Target Full Sequence	1.5	Sequence 2134 from Patent EP2559767	NA	coding protein	psRNATarget
LQ236139.1	ncRNA:22   CCAGUUUGCAAUGUUAGUUUUU   1   |||||||||||||||*|||||| targets:156   GGUCAAACGUUACAAACAAAAA   177 Target Full Sequence	1.5	Sequence 2134 from Patent EP2985353	NA	coding protein	psRNATarget
LQ235858.1	ncRNA:22   CCAGUUUGCAAUGUUAGUUUUU   1   |||||||||||||||*|||||| targets:159   GGUCAAACGUUACAAACAAAAA   180 Target Full Sequence	1.5	Sequence 1853 from Patent EP2985353	NA	coding protein	psRNATarget
JB164189.1	ncRNA:22   CCAGUUUGCAAUGUUAGUUUUU   1   |||||||||||||||*|||||| targets:159   GGUCAAACGUUACAAACAAAAA   180 Target Full Sequence	1.5	Sequence 1853 from Patent EP2559767	NA	coding protein	psRNATarget
HI403728.1	ncRNA:22   CCAGUUUGCAAUGUUAGUUUUU   1   |||||||||||||||*|||||| targets:159   GGUCAAACGUUACAAACAAAAA   180 Target Full Sequence	1.5	Sequence 1853 from Patent EP2074227	NA	coding protein	psRNATarget
CT831424.1	ncRNA:22   CCAGUUUGCAAUGUUAGUUUUU   1   |||||||||||||||*|||||| targets:719   GGUCAAACGUUACAAACAAAAA   740 Target Full Sequence	1.5	Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSN038D01, full insert sequence	NA	coding protein	psRNATarget
AK107988.1	ncRNA:22   CCAGUUUGCAAUGUUAGUUUUU   1   |||||||||||||||*|||||| targets:721   GGUCAAACGUUACAAACAAAAA   742 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA clone:002-135-F03, full insert sequence	NA	coding protein	psRNATarget
XM_015779114.1	ncRNA:22   CCAGUUUGCAAUGUUAGUUUUU   1   |||||||||||||||*|||||| targets:759   GGUCAAACGUUACAAACAAAAA   780 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4326202 (LOC4326202), mRNA	uncharacterized LOC4326202(LOC4326202)	coding protein	psRNATarget
XM_015780608.1	ncRNA:22   CCAGUUUGCAAUGUUAGUUUUU   1   |||||||||||||||*|||||| targets:1787   GGUCAAACGUUACAAACAAAAA   1808 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group amino acid permease 3 (LOC4336246), mRNA	amino acid permease 3(LOC4336246)	coding protein	psRNATarget
AK288465.1	ncRNA:22   CCAGUUUGCAAUGUUAGUUUUU   1   |||||||||||||||*|||||| targets:830   GGUCAAACGUUACAAACAAAAA   851 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA, clone: J090036M08, full insert sequence	NA	coding protein	psRNATarget
CT832636.1	ncRNA:22   CCAGUUUGCAAUGUUAGUUUUU   1   ****||||*||||||||||||| targets:474   AAGAAAACCUUACAAUCAAAAA   495 Target Full Sequence	2.0	Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA106A20, full insert sequence	NA	coding protein	psRNATarget
AK069751.1	ncRNA:22   CCAGUUUGCAAUGUUAGUUUUU   1   ****||||*||||||||||||| targets:493   AAGAAAACCUUACAAUCAAAAA   514 Target Full Sequence	2.0	Oryza sativa Japonica Group cDNA clone:J023030I10, full insert sequence	NA	coding protein	psRNATarget
XM_015759974.1	ncRNA:22   CCAGUUUGCAAUGUUAGUUUUU   1   ****||||*||||||||||||| targets:487   AAGAAAACCUUACAAUCAAAAA   508 Target Full Sequence	2.0	PREDICTED: Oryza sativa Japonica Group 50S ribosomal protein L4 (LOC4350797), mRNA	50S ribosomal protein L4(LOC4350797)	coding protein	psRNATarget