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BaseInfo

ncRNA ID	novel_osa_miR2959
Species	Oryza sativa
Class	miRNA
Genome position	Chr7:13212794-13212941 [-]
Reference genome	IRGSP-1.0
Source	SRR1555747;SRR2098822;SRR2099567;SRR2099746;SRR4407775;SRR4407777;SRR4407954;SRR4407955;SRR4407956;SRR4407961;SRR1556020;SRR1654490
Length	24
Mature sequence(if miRNA)	1 - AAAAAGUCUUAUAUUGUGAAACGG - 24
Stem-loop(if miRNA)	--                    C       A    C  AC  A             C    AAC          G   GUUUCACAAUGUAAGACUUU UAUUAUU UCCA AU  AU UAGAUGUUAAUGA UCUA   ACAUAUAUAU U   |||||||||||||||||||| ||||||| |||| ||  || ||||||||||||| ||||   ||||||||||   CAAAGUGUUAUAUUCUGAAA AUAAUAA AGGU UA  UA AUCUACAAUUACU AGAU   UGUAUAUAUA C GG                    A       C    A  AA  A             U    --C          U
Stem-loop sequence	GUUUCACAAUGUAAGACUUUCUAUUAUUAUCCACAUACAUAUAGAUGUUAAUGACUCUAAACACAUAUAUAUGUCUAUAUAUAUGUCUAGAUUCAUUAACAUCUAAAUAAAUAUGGACAAUAAUAAAAAGUCUUAUAUUGUGAAACGG

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
AK288472.1	ncRNA:24   GGCAAAGUGUUAUAUUCUGAAAAA   1   ||||||||=||||||||||||||| targets:1398   CCGUUUCAUAAUAUAAGACUUUUU   1421 Target Full Sequence	1.0	Oryza sativa Japonica Group cDNA, clone: J090037K20, full insert sequence	NA	coding protein	psRNATarget
XM_015772638.1	ncRNA:24   GGCAAAGUGUUAUAUUCUGAAAAA   1   |||||||||=|||||||||||||| targets:1218   CCGUUUCACGAUAUAAGACUUUUU   1241 Target Full Sequence	1.0	PREDICTED: Oryza sativa Japonica Group probable carboxylesterase 8 (LOC4332273), mRNA	probable carboxylesterase 8(LOC4332273)	coding protein	psRNATarget
AK241082.1	ncRNA:24   GGCAAAGUGUUAUAUUCUGAAAAA   1   |||||||||=|||||||||||||| targets:1201   CCGUUUCACGAUAUAAGACUUUUU   1224 Target Full Sequence	1.0	Oryza sativa Japonica Group cDNA, clone: J065073H04, full insert sequence	NA	coding protein	psRNATarget
AK106502.1	ncRNA:24   GGCAAAGUGUUAUAUUCUGAAAAA   1   ||||||||||||=||||||||||| targets:1436   CCGUUUCACAAUGUAAGACUUUUU   1459 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA clone:002-105-F04, full insert sequence	NA	coding protein	psRNATarget
AK071562.1	ncRNA:24   GGCAAAGUGUUAUAUUCUGAAAAA   1   |=|||||||||||||||||||||| targets:1274   CUGUUUCACAAUAUAAGACUUUUU   1297 Target Full Sequence	0.0	Oryza sativa Japonica Group cDNA clone:J023102P22, full insert sequence	NA	coding protein	psRNATarget
XM_015778351.1	ncRNA:24   GGCAAAGUGUUAUAUUCUGAAAAA   1   ||||||||||||||||||||||*| targets:622   CCGUUUCACAAUAUAAGACUUUGU   645 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group UPF0426 protein At1g28150, chloroplastic (LOC4336466), transcript variant X3, mRNA	UPF0426 protein At1g28150, chloroplastic(LOC4336466)	coding protein	psRNATarget
AK065957.1	ncRNA:24   GGCAAAGUGUUAUAUUCUGAAAAA   1   ||||||||||||||||||||||*| targets:564   CCGUUUCACAAUAUAAGACUUUGU   587 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA clone:J013044D08, full insert sequence	NA	coding protein	psRNATarget
CT831361.1	ncRNA:24   GGCAAAGUGUUAUAUUCUGAAAAA   1   ||||||||=|||||||||||||*| targets:1943   CCGUUUCAUAAUAUAAGACUUUCU   1966 Target Full Sequence	2.5	Oryza sativa (indica cultivar-group) cDNA clone:OSIGCPI207J06, full insert sequence	NA	coding protein	psRNATarget
AK106777.1	ncRNA:24   GGCAAAGUGUUAUAUUCUGAAAAA   1   ||||||||=||||||||*|||||| targets:1274   CCGUUUCAUAAUAUAAGUCUUUUU   1297 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:002-115-G12, full insert sequence	NA	coding protein	psRNATarget
XM_015769449.1	ncRNA:24   GGCAAAGUGUUAUAUUCUGAAAAA   1   ||||||||=|*||||||||||||| targets:68   CCGUUUCAUAUUAUAAGACUUUUU   91 Target Full Sequence	2.0	PREDICTED: Oryza sativa Japonica Group ethylene-responsive transcription factor ERF018-like (LOC107278604), mRNA	ethylene-responsive transcription factor ERF018-like(LOC107278604)	coding protein	psRNATarget
XM_015794357.1	ncRNA:24   GGCAAAGUGUUAUAUUCUGAAAAA   1   ||||||||||||||||*||||||* targets:1336   CCGUUUCACAAUAUAAAACUUUUA   1359 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4327949 (LOC4327949), mRNA	uncharacterized LOC4327949(LOC4327949)	coding protein	psRNATarget
AK067363.1	ncRNA:24   GGCAAAGUGUUAUAUUCUGAAAAA   1   ||||||||*|*||||||||||||| targets:949   CCGUUUCAGAUUAUAAGACUUUUU   972 Target Full Sequence	2.0	Oryza sativa Japonica Group cDNA clone:J013100G02, full insert sequence	NA	coding protein	psRNATarget
AK243152.1	ncRNA:24   GGCAAAGUGUUAUAUUCUGAAAAA   1   ||*|||||*||||||||||*|||| targets:3452   CCUUUUCAAAAUAUAAGACAUUUU   3475 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J100032N02, full insert sequence	NA	coding protein	psRNATarget
CT835385.1	ncRNA:24   GGCAAAGUGUUAUAUUCUGAAAAA   1   ||*|||||*||||||||||*|||| targets:1510   CCUUUUCAAAAUAUAAGACAUUUU   1533 Target Full Sequence	2.5	Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA106L08, full insert sequence	NA	coding protein	psRNATarget