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BaseInfo

ncRNA ID novel_osa_miR2958
Species Oryza sativa
Class miRNA
Genome position Chr3:5600042-5600228 [+]
Reference genome IRGSP-1.0
Source SRR2040383;SRR2040388;SRR2040390;SRR2040391;SRR2040394;SRR2040397;SRR2040400;SRR2040401;SRR2040403;SRR2040404;SRR2040406;SRR2040408;SRR2040411;SRR2857729;SRR1612403
Length 24
Mature sequence(if miRNA) 164 - AUGUGAGAAAAAGUCAACGGCGCC - 187
Stem-loop(if miRNA) --                                                A    C    UUAUAUUUAUUU   U     U   UUU     UAA   U
  CGCCGUUGACUUUUUCUCACAUGUUUGACCAUUCGUCUUAUUCAAAAA UUUA GUAA            UGU AUGAG UGU   AUCAC   UAG A
  |||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||            ||| ||||| |||   |||||   |||
  GCGGCAACUGAAAAAGAGUGUACAAACUGGUAAGCAGAAUAAGUUUUU AAAU CGUU            ACA UAUUC AUA   UAGUG   AUU C
CC                                                A    A    -----------U   -     U   -UU     UGA   U
Stem-loop sequence CGCCGUUGACUUUUUCUCACAUGUUUGACCAUUCGUCUUAUUCAAAAAAUUUACGUAAUUAUAUUUAUUUUGUUAUGAGUUGUUUUAUCACUAAUAGUACUUUAAGUGUGAUUUAUAUCUUAUACAUUUGCAUAAAAUUUUUGAAUAAGACGAAUGGUCAAACAUGUGAGAAAAAGUCAACGGCGCC

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
AK288179.1
ncRNA:24   CCGCGGCAACUGAAAAAGAGUGUA   1
  |*||||||||||||||||||||||
targets:3592   GACGCCGUUGACUUUUUCUCACAU   3615

0.0 Oryza sativa Japonica Group cDNA, clone: J090005B04, full insert sequence NA coding protein psRNATarget
AK068475.1
ncRNA:24   CCGCGGCAACUGAAAAAGAGUGUA   1
  |*||||||||||||||||||||||
targets:2171   GACGCCGUUGACUUUUUCUCACAU   2194

0.0 Oryza sativa Japonica Group cDNA clone:J013152H07, full insert sequence NA coding protein psRNATarget
AK288827.1
ncRNA:24   CCGCGGCAACUGAAAAAGAGUGUA   1
  |*||||||||||||||||||||||
targets:1241   GACGCCGUUGACUUUUUCUCACAU   1264

0.0 Oryza sativa Japonica Group cDNA, clone: J090073J08, full insert sequence NA coding protein psRNATarget
XM_015766756.1
ncRNA:24   CCGCGGCAACUGAAAAAGAGUGUA   1
  |*||||||||||||||||||||||
targets:1829   GACGCCGUUGACUUUUUCUCACAU   1852

0.0 PREDICTED: Oryza sativa Japonica Group probable glucuronosyltransferase Os01g0926600 (LOC4327242), mRNA probable glucuronosyltransferase Os01g0926600(LOC4327242) coding protein psRNATarget
CT834818.1
ncRNA:24   CCGCGGCAACUGAAAAAGAGUGUA   1
  |*|||||||||||||||||||=||
targets:2273   GACGCCGUUGACUUUUUCUCAUAU   2296

1.5 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCFA228H20, full insert sequence NA coding protein psRNATarget
CT837513.1
ncRNA:24   CCGCGGCAACUGAAAAAGAGUGUA   1
  |*|||||||||||||||||=||||
targets:475   GACGCCGUUGACUUUUUCUUACAU   498

1.5 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCEA001P06, full insert sequence NA coding protein psRNATarget
XM_015776802.1
ncRNA:24   CCGCGGCAACUGAAAAAGAGUGUA   1
  |*|||||||||||||||||||||*
targets:1985   GACGCCGUUGACUUUUUCUCACAC   2008

1.0 PREDICTED: Oryza sativa Japonica Group xyloglucan galactosyltransferase KATAMARI1 homolog (LOC4331596), transcript variant X1, mRNA xyloglucan galactosyltransferase KATAMARI1 homolog(LOC4331596) coding protein psRNATarget
XM_015776803.1
ncRNA:24   CCGCGGCAACUGAAAAAGAGUGUA   1
  |*|||||||||||||||||||||*
targets:1562   GACGCCGUUGACUUUUUCUCACAC   1585

1.0 PREDICTED: Oryza sativa Japonica Group xyloglucan galactosyltransferase KATAMARI1 homolog (LOC4331596), transcript variant X2, mRNA xyloglucan galactosyltransferase KATAMARI1 homolog(LOC4331596) coding protein psRNATarget
AK288409.1
ncRNA:24   CCGCGGCAACUGAAAAA-GAGUGUA   1
  |*|||||||||||||||-|||||||
targets:583   GACGCCGUUGACUUUUUUCUCACAU   607

3.0 Oryza sativa Japonica Group cDNA, clone: J090030J15, full insert sequence NA coding protein psRNATarget
CT830548.1
ncRNA:24   CCGCGGCAACUGAAAAAGAGUGUA   1
  **||=||||||||||||||||=||
targets:1814   AACGUCGUUGACUUUUUCUCAUAU   1837

1.5 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCEA037O15, full insert sequence NA coding protein psRNATarget
AK288773.1
ncRNA:24   CCGCGGCAACUGAAAAAGAGUGUA   1
  |*||||||||||||||||*|||||
targets:3735   GACGCCGUUGACUUUUUCGCACAU   3758

1.5 Oryza sativa Japonica Group cDNA, clone: J090068D07, full insert sequence NA coding protein psRNATarget
AK288309.1
ncRNA:24   CCGCGGCAACUGAAAAAGAGUGUA   1
  |*|||||||||||||||||||*||
targets:881   GACGCCGUUGACUUUUUCUCAAAU   904

1.5 Oryza sativa Japonica Group cDNA, clone: J090020H08, full insert sequence NA coding protein psRNATarget
XM_015786078.1
ncRNA:24   CCGCGGCAACUGAAAAAGAGUGUA   1
  |*|||||||||||||||*||||||
targets:1825   GACGCCGUUGACUUUUUAUCACAU   1848

1.5 PREDICTED: Oryza sativa Japonica Group UDP-glycosyltransferase TURAN (LOC4341323), transcript variant X10, mRNA UDP-glycosyltransferase TURAN(LOC4341323) coding protein psRNATarget
XM_015786068.1
ncRNA:24   CCGCGGCAACUGAAAAAGAGUGUA   1
  |*|||||||||||||||*||||||
targets:1742   GACGCCGUUGACUUUUUAUCACAU   1765

1.5 PREDICTED: Oryza sativa Japonica Group UDP-glycosyltransferase TURAN (LOC4341323), transcript variant X1, mRNA UDP-glycosyltransferase TURAN(LOC4341323) coding protein psRNATarget
XM_015786071.1
ncRNA:24   CCGCGGCAACUGAAAAAGAGUGUA   1
  |*|||||||||||||||*||||||
targets:1715   GACGCCGUUGACUUUUUAUCACAU   1738

1.5 PREDICTED: Oryza sativa Japonica Group UDP-glycosyltransferase TURAN (LOC4341323), transcript variant X3, mRNA UDP-glycosyltransferase TURAN(LOC4341323) coding protein psRNATarget
XM_015786073.1
ncRNA:24   CCGCGGCAACUGAAAAAGAGUGUA   1
  |*|||||||||||||||*||||||
targets:1598   GACGCCGUUGACUUUUUAUCACAU   1621

1.5 PREDICTED: Oryza sativa Japonica Group UDP-glycosyltransferase TURAN (LOC4341323), transcript variant X5, mRNA UDP-glycosyltransferase TURAN(LOC4341323) coding protein psRNATarget
XM_015786074.1
ncRNA:24   CCGCGGCAACUGAAAAAGAGUGUA   1
  |*|||||||||||||||*||||||
targets:1594   GACGCCGUUGACUUUUUAUCACAU   1617

1.5 PREDICTED: Oryza sativa Japonica Group UDP-glycosyltransferase TURAN (LOC4341323), transcript variant X6, mRNA UDP-glycosyltransferase TURAN(LOC4341323) coding protein psRNATarget
XM_015786075.1
ncRNA:24   CCGCGGCAACUGAAAAAGAGUGUA   1
  |*|||||||||||||||*||||||
targets:1594   GACGCCGUUGACUUUUUAUCACAU   1617

1.5 PREDICTED: Oryza sativa Japonica Group UDP-glycosyltransferase TURAN (LOC4341323), transcript variant X7, mRNA UDP-glycosyltransferase TURAN(LOC4341323) coding protein psRNATarget
XM_015786077.1
ncRNA:24   CCGCGGCAACUGAAAAAGAGUGUA   1
  |*|||||||||||||||*||||||
targets:1587   GACGCCGUUGACUUUUUAUCACAU   1610

1.5 PREDICTED: Oryza sativa Japonica Group UDP-glycosyltransferase TURAN (LOC4341323), transcript variant X9, mRNA UDP-glycosyltransferase TURAN(LOC4341323) coding protein psRNATarget
XM_015786072.1
ncRNA:24   CCGCGGCAACUGAAAAAGAGUGUA   1
  |*|||||||||||||||*||||||
targets:1511   GACGCCGUUGACUUUUUAUCACAU   1534

1.5 PREDICTED: Oryza sativa Japonica Group UDP-glycosyltransferase TURAN (LOC4341323), transcript variant X4, mRNA UDP-glycosyltransferase TURAN(LOC4341323) coding protein psRNATarget
XM_015786076.1
ncRNA:24   CCGCGGCAACUGAAAAAGAGUGUA   1
  |*|||||||||||||||*||||||
targets:1462   GACGCCGUUGACUUUUUAUCACAU   1485

1.5 PREDICTED: Oryza sativa Japonica Group UDP-glycosyltransferase TURAN (LOC4341323), transcript variant X8, mRNA UDP-glycosyltransferase TURAN(LOC4341323) coding protein psRNATarget
XM_015783321.1
ncRNA:24   CCGCGGCAACUGAAAAAGAGUGUA   1
  |*|*||||||||||||||||||||
targets:1672   GACACCGUUGACUUUUUCUCACAU   1695

0.0 PREDICTED: Oryza sativa Japonica Group anthocyanidin 5,3-O-glucosyltransferase (LOC4339395), mRNA anthocyanidin 5,3-O-glucosyltransferase(LOC4339395) coding protein psRNATarget
XM_015795035.1
ncRNA:24   CCGCGGCAACUGAAAAAGAGUGUA   1
  |*|||||||*||||||||||||||
targets:1064   GACGCCGUUAACUUUUUCUCACAU   1087

1.0 PREDICTED: Oryza sativa Japonica Group calcineurin B-like protein 10 (LOC4325933), transcript variant X1, mRNA calcineurin B-like protein 10(LOC4325933) coding protein psRNATarget
AK288135.1
ncRNA:24   CCGCGGCAACUGAAAAAGAGUGUA   1
  |*|||||||||||||||*||||||
targets:395   GACGCCGUUGACUUUUUAUCACAU   418

1.5 Oryza sativa Japonica Group cDNA, clone: J080305D01, full insert sequence NA coding protein psRNATarget
AK289053.1
ncRNA:24   CCGCGGCAACUGAAAAAGAGUGUA   1
  |*|*||||||==||||||||||||
targets:613   GACACCGUUGGUUUUUUCUCACAU   636

2.5 Oryza sativa Japonica Group cDNA, clone: J090092P21, full insert sequence NA coding protein psRNATarget
AK073459.1
ncRNA:24   CCGCGGCAACUGAAAAAGAGUGUA   1
  |*||||*||||||||||*||||||
targets:868   GACGCCAUUGACUUUUUAUCACAU   891

2.5 Oryza sativa Japonica Group cDNA clone:J033040L10, full insert sequence NA coding protein psRNATarget
AK288852.1
ncRNA:24   CCGCGGCAACUGAAAAAGAGUGUA   1
  |*=|||*||||||||||*||||||
targets:4624   GAUGCCAUUGACUUUUUGUCACAU   4647

2.5 Oryza sativa Japonica Group cDNA, clone: J090075M07, full insert sequence NA coding protein psRNATarget
AK288459.1
ncRNA:24   CCGCGGCAACUGAAAAAGAGUGUA   1
  *|***||||||||||||*||||||
targets:486   UGACACGUUGACUUUUUAUCACAU   509

1.5 Oryza sativa Japonica Group cDNA, clone: J090035G07, full insert sequence NA coding protein psRNATarget
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