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BaseInfo

ncRNA ID novel_osa_miR2957
Species Oryza sativa
Class miRNA
Genome position Chr3:24539315-24539361 [-]
Reference genome IRGSP-1.0
Source SRR2040383;SRR2040400;SRR2040409
Length 23
Mature sequence(if miRNA) 25 - UUCUAGUACAAUAAAUCUGGACU - 47
Stem-loop(if miRNA) --                    A
  UUCUAGUACAAUAAAUCUGG C
  |||||||||||||||||||| U
  AAGAUCAUGUUAUUUAGAUC G
GU                    U
Stem-loop sequence UUCUAGUACAAUAAAUCUGGACUGUCUAGAUUUAUUGUACUAGAAUG

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_015764275.1
ncRNA:23   UCAGGUCUAAAUAACAUGAUCUU   1
  *|||=||||||||||||||||||
targets:2178   UGUCUAGAUUUAUUGUACUAGAA   2200

1.0 PREDICTED: Oryza sativa Japonica Group probable LRR receptor-like serine/threonine-protein kinase MRH1 (LOC4351262), transcript variant X2, mRNA probable LRR receptor-like serine/threonine-protein kinase MRH1(LOC4351262) coding protein psRNATarget
XM_015764274.1
ncRNA:23   UCAGGUCUAAAUAACAUGAUCUU   1
  *|||=||||||||||||||||||
targets:2160   UGUCUAGAUUUAUUGUACUAGAA   2182

1.0 PREDICTED: Oryza sativa Japonica Group probable LRR receptor-like serine/threonine-protein kinase MRH1 (LOC4351262), transcript variant X1, mRNA probable LRR receptor-like serine/threonine-protein kinase MRH1(LOC4351262) coding protein psRNATarget
XM_015764277.1
ncRNA:23   UCAGGUCUAAAUAACAUGAUCUU   1
  *|||=||||||||||||||||||
targets:2154   UGUCUAGAUUUAUUGUACUAGAA   2176

1.0 PREDICTED: Oryza sativa Japonica Group probable LRR receptor-like serine/threonine-protein kinase MRH1 (LOC4351262), transcript variant X4, mRNA probable LRR receptor-like serine/threonine-protein kinase MRH1(LOC4351262) coding protein psRNATarget
XM_015764276.1
ncRNA:23   UCAGGUCUAAAUAACAUGAUCUU   1
  *|||=||||||||||||||||||
targets:2117   UGUCUAGAUUUAUUGUACUAGAA   2139

1.0 PREDICTED: Oryza sativa Japonica Group probable LRR receptor-like serine/threonine-protein kinase MRH1 (LOC4351262), transcript variant X3, mRNA probable LRR receptor-like serine/threonine-protein kinase MRH1(LOC4351262) coding protein psRNATarget
AK070979.1
ncRNA:23   UCAGGUCUAAAUAACAUGAUCUU   1
  *|||=||||||||||||||||||
targets:2300   UGUCUAGAUUUAUUGUACUAGAA   2322

1.0 Oryza sativa Japonica Group cDNA clone:J023073D05, full insert sequence NA coding protein psRNATarget
XM_015776443.1
ncRNA:23   UCAGGUCUAAAUAACAUGAUCUU   1
  *||||||||||||||||||||=|
targets:1382   UGUCCAGAUUUAUUGUACUAGGA   1404

1.5 PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4327623 (LOC4327623), mRNA uncharacterized LOC4327623(LOC4327623) coding protein psRNATarget
XM_015780738.1
ncRNA:23   UCAGGUCUAAAUAACAUGAUCUU   1
  *||=|||||||=|||||||||||
targets:921   UGUUCAGAUUUGUUGUACUAGAA   943

1.5 PREDICTED: Oryza sativa Japonica Group UPF0548 protein At2g17695 (LOC4334967), transcript variant X2, mRNA UPF0548 protein At2g17695(LOC4334967) coding protein psRNATarget
XM_015780740.1
ncRNA:23   UCAGGUCUAAAUAACAUGAUCUU   1
  *||=|||||||=|||||||||||
targets:921   UGUUCAGAUUUGUUGUACUAGAA   943

1.5 PREDICTED: Oryza sativa Japonica Group UPF0548 protein At2g17695 (LOC4334967), transcript variant X4, mRNA UPF0548 protein At2g17695(LOC4334967) coding protein psRNATarget
XM_015780739.1
ncRNA:23   UCAGGUCUAAAUAACAUGAUCUU   1
  *||=|||||||=|||||||||||
targets:921   UGUUCAGAUUUGUUGUACUAGAA   943

1.5 PREDICTED: Oryza sativa Japonica Group UPF0548 protein At2g17695 (LOC4334967), transcript variant X3, mRNA UPF0548 protein At2g17695(LOC4334967) coding protein psRNATarget
XM_015776920.1
ncRNA:23   UCAGGUCUAAAUAACAUGAUCUU   1
  *||=|||||||||||||||||=|
targets:1   UGUUCAGAUUUAUUGUACUAGGA   23

1.5 PREDICTED: Oryza sativa Japonica Group fasciclin-like arabinogalactan protein 16 (LOC4334368), mRNA fasciclin-like arabinogalactan protein 16(LOC4334368) coding protein psRNATarget
AK063452.1
ncRNA:23   UCAGGUCUAAAUAACAUGAUCUU   1
  *|||||||||*||||||||||||
targets:150   UGUCCAGAUUCAUUGUACUAGAA   172

1.5 Oryza sativa Japonica Group cDNA clone:001-115-G03, full insert sequence NA coding protein psRNATarget
XM_015759388.1
ncRNA:23   UCAGGUCUAAAUAACAUGAUCUU   1
  *|||||||||*||||||||||||
targets:448   UGUCCAGAUUCAUUGUACUAGAA   470

1.5 PREDICTED: Oryza sativa Japonica Group ent-cassadiene C2-hydroxylase-like (LOC4348721), transcript variant X2, mRNA ent-cassadiene C2-hydroxylase-like(LOC4348721) coding protein psRNATarget
XM_015766593.1
ncRNA:23   UCAGGUCUAAAUAACAUGAUCUU   1
  |||*|||=||*||||||||||||
targets:1939   AGUACAGGUUCAUUGUACUAGAA   1961

2.5 PREDICTED: Oryza sativa Japonica Group glutathione S-transferase T3 (LOC4324954), transcript variant X2, mRNA glutathione S-transferase T3(LOC4324954) coding protein psRNATarget
XM_015766594.1
ncRNA:23   UCAGGUCUAAAUAACAUGAUCUU   1
  |||*|||=||*||||||||||||
targets:1939   AGUACAGGUUCAUUGUACUAGAA   1961

2.5 PREDICTED: Oryza sativa Japonica Group glutathione S-transferase T3 (LOC4324954), transcript variant X3, mRNA glutathione S-transferase T3(LOC4324954) coding protein psRNATarget
XM_015766595.1
ncRNA:23   UCAGGUCUAAAUAACAUGAUCUU   1
  |||*|||=||*||||||||||||
targets:1939   AGUACAGGUUCAUUGUACUAGAA   1961

2.5 PREDICTED: Oryza sativa Japonica Group glutathione S-transferase T3 (LOC4324954), transcript variant X4, mRNA glutathione S-transferase T3(LOC4324954) coding protein psRNATarget
XM_015792994.1
ncRNA:23   UCAGGUCUAAAUAACAUGAUCUU   1
  **||=|||||*||||||||||||
targets:1660   UAUCUAGAUUCAUUGUACUAGAA   1682

2.5 PREDICTED: Oryza sativa Japonica Group putative serine/threonine-protein kinase-like protein CCR3 (LOC4345414), mRNA putative serine/threonine-protein kinase-like protein CCR3(LOC4345414) coding protein psRNATarget
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