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BaseInfo

ncRNA ID	novel_osa_miR2954
Species	Oryza sativa
Class	miRNA
Genome position	Chr3:33584943-33585023 [+]
Reference genome	IRGSP-1.0
Source	SRR2040383;SRR2040392;SRR2857733
Length	21
Mature sequence(if miRNA)	61 - CAUGGAUGGAAUGGGAUUCUG - 81
Stem-loop(if miRNA)	--C       G          U  AUA          CUG    AAUCCCA UCCAUCCAUG GU   GGCCAGGAUU   A    ||||||| |||||||||| ||   ||||||||||   A    UUAGGGU AGGUAGGUAC CA   CCGGUCCUAA   C GUC       A          U  AAC          AAU
Stem-loop sequence	CAAUCCCAGUCCAUCCAUGUGUAUAGGCCAGGAUUCUGAACUAAAAUCCUGGCCCAAACUCAUGGAUGGAAUGGGAUUCUG

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
AK073430.1	ncRNA:21   GUCUUAGGGUAAGGUAGGUAC   1   |**|||||||*|||||||||| targets:1460   CUCAAUCCCAGUCCAUCCAUG   1480 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:J033043M17, full insert sequence	NA	coding protein	psRNATarget
XM_015776971.1	ncRNA:21   GUCUUAGGGUAAGGUAGGUAC   1   |**|||||||*|||||||||| targets:2683   CUCAAUCCCAGUCCAUCCAUG   2703 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group exocyst complex component EXO84B (LOC4334486), transcript variant X1, mRNA	exocyst complex component EXO84B(LOC4334486)	coding protein	psRNATarget
AK120592.1	ncRNA:21   GUCUUAGGGUAAGGUAGGUAC   1   |**|||||||*|||||||||| targets:3572   CUCAAUCCCAGUCCAUCCAUG   3592 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:J013146K15, full insert sequence	NA	coding protein	psRNATarget
XM_015771294.1	ncRNA:21   GUCUUAGGGUAAGGUAGGUAC   1   |****|||||||||||||||| targets:73   CCCUCUCCCAUUCCAUCCAUG   93 Target Full Sequence	3.0	PREDICTED: Oryza sativa Japonica Group DNA repair protein RAD50 (LOC4329409), transcript variant X1, mRNA	DNA repair protein RAD50(LOC4329409)	coding protein	psRNATarget
XM_015766729.1	ncRNA:21   GUCUUAGGGUAAGGUAGGUAC   1   |*||*|=|||||||||||||* targets:168   CCGAUUUCCAUUCCAUCCAUC   188 Target Full Sequence	3.0	PREDICTED: Oryza sativa Japonica Group E3 ubiquitin-protein ligase RGLG1 (LOC4325244), transcript variant X1, mRNA	E3 ubiquitin-protein ligase RGLG1(LOC4325244)	coding protein	psRNATarget
AK065423.1	ncRNA:21   GUCUUAGGGUAAGGUAGGUAC   1   |*||*|=|||||||||||||* targets:193   CCGAUUUCCAUUCCAUCCAUC   213 Target Full Sequence	3.0	Oryza sativa Japonica Group cDNA clone:J013020F11, full insert sequence	NA	coding protein	psRNATarget