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BaseInfo

ncRNA ID	novel_osa_miR2952
Species	Oryza sativa
Class	miRNA
Genome position	Chr1:42219474-42219579 [-]
Reference genome	IRGSP-1.0
Source	SRR1555747;SRR4407775;SRR4407961;SRR1556020
Length	24
Mature sequence(if miRNA)	1 - AUAUGUUAAUGAAUCUAGACACAU - 24
Stem-loop(if miRNA)	--                        GAAUAUAGAUGUUA         A       CAU   GUGUCUAGAUUCAUUAACAUAUAU              AUGAAUCUA ACACACA   A   ||||||||||||||||||||||||              ||||||||| |||||||   CACAGAUCUAAGUAAUUGUAUAUA              UACUUAGAU UGUGUGU   U UA                        --------------         C       AUA
Stem-loop sequence	GUGUCUAGAUUCAUUAACAUAUAUGAAUAUAGAUGUUAAUGAAUCUAAACACACACAUAUAUAUGUGUGUCUAGAUUCAUAUAUAUGUUAAUGAAUCUAGACACAU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
AK109562.1	ncRNA:24   UACACA--GAUCUAAGUAAUUGUAUA   1   ||||||--|||||||||||||||||| targets:772   AUGUGUGCCUAGAUUCAUUAACAUAU   797 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:002-128-B06, full insert sequence	NA	coding protein	psRNATarget
XM_015791317.1	ncRNA:24   UACACAGAUCUAAGUAAUUGUAUA   1   ||*||||||||||||||||||||| targets:4493   AUAUGUCUAGAUUCAUUAACAUAU   4516 Target Full Sequence	0.0	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4342778 (LOC4342778), transcript variant X1, mRNA	uncharacterized LOC4342778(Os07g0231700)	coding protein	psRNATarget
AK288568.1	ncRNA:24   UACACAGAUCUAAGUAAUUGUAUA   1   ||*||||||||||||||||||||| targets:1437   AUAUGUCUAGAUUCAUUAACAUAU   1460 Target Full Sequence	0.0	Oryza sativa Japonica Group cDNA, clone: J090048B06, full insert sequence	NA	coding protein	psRNATarget
XM_015787712.1	ncRNA:24   UACACAGAUCUAAGUAAUUGUAUA   1   ||*||||||||||||||||||||| targets:587   AUAUGUCUAGAUUCAUUAACAUAU   610 Target Full Sequence	0.0	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4340081 (LOC4340081), transcript variant X4, mRNA	uncharacterized LOC4340081(Os06g0142000)	coding protein	psRNATarget
XM_015787709.1	ncRNA:24   UACACAGAUCUAAGUAAUUGUAUA   1   ||*||||||||||||||||||||| targets:587   AUAUGUCUAGAUUCAUUAACAUAU   610 Target Full Sequence	0.0	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4340081 (LOC4340081), transcript variant X1, mRNA	uncharacterized LOC4340081(Os06g0142000)	coding protein	psRNATarget
XM_015795948.1	ncRNA:24   UACACAGAUCUAAGUAAUUGUAUA   1   ||*||||||||||||||||||||| targets:1060   AUAUGUCUAGAUUCAUUAACAUAU   1083 Target Full Sequence	0.0	PREDICTED: Oryza sativa Japonica Group 60S ribosomal protein L18a-like protein (LOC4326318), mRNA	60S ribosomal protein L18a-like protein(LOC4326318)	coding protein	psRNATarget
CT837804.1	ncRNA:24   UACACAGAUCUAAGUAAUUGUAUA   1   ||*||||||||||||||||||||| targets:923   AUAUGUCUAGAUUCAUUAACAUAU   946 Target Full Sequence	0.0	Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA115N24, full insert sequence	NA	coding protein	psRNATarget
AK287948.1	ncRNA:24   UACACAGAUCUAAGUAAUUGUAUA   1   ||*||||||||||||||||||||| targets:910   AUAUGUCUAGAUUCAUUAACAUAU   933 Target Full Sequence	0.0	Oryza sativa Japonica Group cDNA, clone: J075028D01, full insert sequence	NA	coding protein	psRNATarget
AK099933.1	ncRNA:24   UACACAGAUCUAAGUAAUUGUAUA   1   ||*||||||||||||||||=|||| targets:408   AUAUGUCUAGAUUCAUUAAUAUAU   431 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA clone:J013119E02, full insert sequence	NA	coding protein	psRNATarget
XM_015755177.1	ncRNA:24   UACACAGAUCUAAGUAAUUGUAUA   1   ||*|||||||||||||||||=||| targets:1805   AUAUGUCUAGAUUCAUUAACGUAU   1828 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group glutathione S-transferase T3 (LOC4346703), transcript variant X1, mRNA	glutathione S-transferase T3(LOC4346703)	coding protein	psRNATarget
XM_015781389.1	ncRNA:24   UACACAGAUCUAAGUAAUUGUAUA   1   ||*|||=||||||||||||||||| targets:800   AUAUGUUUAGAUUCAUUAACAUAU   823 Target Full Sequence	1.0	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4336685 (LOC4336685), transcript variant X1, mRNA	uncharacterized LOC4336685(LOC4336685)	coding protein	psRNATarget
XM_015781390.1	ncRNA:24   UACACAGAUCUAAGUAAUUGUAUA   1   ||*|||=||||||||||||||||| targets:800   AUAUGUUUAGAUUCAUUAACAUAU   823 Target Full Sequence	1.0	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4336685 (LOC4336685), transcript variant X2, mRNA	uncharacterized LOC4336685(LOC4336685)	coding protein	psRNATarget
XM_015794357.1	ncRNA:24   UACACAGAUCUAAGUAAUUGUAUA   1   ||-|||||||||||||||||||=| targets:1371   AU-UGUCUAGAUUCAUUAACAUGU   1393 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4327949 (LOC4327949), mRNA	uncharacterized LOC4327949(LOC4327949)	coding protein	psRNATarget
AK071625.1	ncRNA:24   UAC-ACAGAUCUAAGUAAUUGUAUA   1   |||-||||||||||||||*|||||| targets:1336   AUGCUGUCUAGAUUCAUUUACAUAU   1360 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA clone:J023106F16, full insert sequence	NA	coding protein	psRNATarget
XM_015767450.1	ncRNA:24   UACACAGAUCUAAGUAAUUGUAUA   1   ||*|||||||||||||||=||||* targets:1413   AUAUGUCUAGAUUCAUUAGCAUAC   1436 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4328324 (LOC4328324), transcript variant X1, mRNA	uncharacterized LOC4328324(LOC4328324)	coding protein	psRNATarget
XM_015767451.1	ncRNA:24   UACACAGAUCUAAGUAAUUGUAUA   1   ||*|||||||||||||||=||||* targets:1413   AUAUGUCUAGAUUCAUUAGCAUAC   1436 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4328324 (LOC4328324), transcript variant X2, mRNA	uncharacterized LOC4328324(LOC4328324)	coding protein	psRNATarget
AK068770.1	ncRNA:24   UACACAGAUCUAAGUAAUUGUAUA   1   ||*|||||||||||||||=||||* targets:1657   AUAUGUCUAGAUUCAUUAGCAUAC   1680 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:J013169P07, full insert sequence	NA	coding protein	psRNATarget
CT832555.1	ncRNA:24   UACACAGAUCUAAGUAAUUGUAUA   1   ||*|||||||||||||||=||||* targets:1406   AUAUGUCUAGAUUCAUUAGCAUAC   1429 Target Full Sequence	2.5	Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA110J22, full insert sequence	NA	coding protein	psRNATarget
XM_015777008.1	ncRNA:24   UACACAGAUCUAAGUAAUUGUAUA   1   ||*||||||||||||||||=|||* targets:1421   AUAUGUCUAGAUUCAUUAAUAUAC   1444 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4331744 (LOC4331744), mRNA	uncharacterized LOC4331744(LOC4331744)	coding protein	psRNATarget
CT828736.1	ncRNA:24   UACACAGAUCUAAGUAAUUGUAUA   1   ||*|||||||||||||||=||||* targets:798   AUAUGUCUAGAUUCAUUAGCAUAC   821 Target Full Sequence	2.5	Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA125N05, full insert sequence	NA	coding protein	psRNATarget
AK072517.1	ncRNA:24   UACACAGAUCUAAGUAAUUGUAUA   1   ||*|||||||||||||||||||*| targets:1378   AUAUGUCUAGAUUCAUUAACAUCU   1401 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA clone:J023133J02, full insert sequence	NA	coding protein	psRNATarget
AK067363.1	ncRNA:24   UACACAGAUCUAAGUAAUUGUAUA   1   ||*||||||*|||||||||||||| targets:1018   AUAUGUCUACAUUCAUUAACAUAU   1041 Target Full Sequence	1.0	Oryza sativa Japonica Group cDNA clone:J013100G02, full insert sequence	NA	coding protein	psRNATarget
AK288472.1	ncRNA:24   UACACAGAUCUAAGUAAUUGUAUA   1   ||*|||||||||||||||||||*| targets:1470   AUAUGUCUAGAUUCAUUAACAUCU   1493 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA, clone: J090037K20, full insert sequence	NA	coding protein	psRNATarget
XM_015766247.1	ncRNA:24   UACACAGAUCUAAGUAAUUGUAUA   1   ||*|*||||||||||||||||||| targets:2550   AUAUAUCUAGAUUCAUUAACAUAU   2573 Target Full Sequence	0.0	PREDICTED: Oryza sativa Japonica Group putative receptor protein kinase ZmPK1 (LOC107277300), mRNA	putative receptor protein kinase ZmPK1(LOC107277300)	coding protein	psRNATarget
XM_015755249.1	ncRNA:24   UACACAGAUCUAAGUAAUUGUAUA   1   ***|||||||||||||||||=||| targets:789   UCAUGUCUAGAUUCAUUAACGUAU   812 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4347372 (LOC4347372), mRNA	uncharacterized LOC4347372(LOC4347372)	coding protein	psRNATarget
AK065951.1	ncRNA:24   UACACAGAUCUAAGUAAUUGUAUA   1   ||-|||||||||||||||||||** targets:2759   AU-UGUCUAGAUUCAUUAACAUCA   2781 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:J013045C05, full insert sequence	NA	coding protein	psRNATarget
XM_015786593.1	ncRNA:24   UACACAGAUCUAAGUAAUUGUAUA   1   *|*||||||||||||||||=|||* targets:982   CUCUGUCUAGAUUCAUUAAUAUAA   1005 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4340983 (LOC4340983), mRNA	uncharacterized LOC4340983(LOC4340983)	coding protein	psRNATarget
AK071746.1	ncRNA:24   UACACAGAUCUAAGUAAUUGUAUA   1   *|*||||||||||||||||=|||* targets:884   CUCUGUCUAGAUUCAUUAAUAUAA   907 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:J023111G24, full insert sequence	NA	coding protein	psRNATarget
BT131987.1	ncRNA:24   UACACAGAUCUAAGUAAUUGUAUA   1   *|*|||||||||||||||=||||* targets:4   NUAUGUCUAGAUUCAUUAGCAUAC   27 Target Full Sequence	2.5	Oryza sativa clone RRlibB00014 mRNA sequence	NA	coding protein	psRNATarget
XM_015761417.1	ncRNA:24   UACACAGAUCUAAGUAAUUGUAUA   1   ||*|*||||||||=|||||||||* targets:384   AUCUAUCUAGAUUUAUUAACAUAA   407 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC9270662 (LOC9270662), transcript variant X2, mRNA	uncharacterized LOC9270662(LOC9270662)	coding protein	psRNATarget
CT834348.1	ncRNA:24   UACACAGAUCUAAGUAAUUGUAUA   1   ||*|||*||||*|||||||||||| targets:1427   AUAUGUAUAGACUCAUUAACAUAU   1450 Target Full Sequence	2.5	Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA106J11, full insert sequence	NA	coding protein	psRNATarget
AK288871.1	ncRNA:24   UACACAGAUCUAAGUAAUUGUAUA   1   ||*|*|||||||||||||||||** targets:4338   AUCUAUCUAGAUUCAUUAACAUCA   4361 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J090078G09, full insert sequence	NA	coding protein	psRNATarget
AK241906.1	ncRNA:24   UACACAGAUCUAAGUAAUUGUAUA   1   ||***|||||||||||||||||=| targets:1073   AUAAAUCUAGAUUCAUUAACAUGU   1096 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA, clone: J075049G22, full insert sequence	NA	coding protein	psRNATarget