Search result

BaseInfo

ncRNA ID	novel_osa_miR2949
Species	Oryza sativa
Class	miRNA
Genome position	Chr2:14724690-14724806 [-]
Reference genome	IRGSP-1.0
Source	SRR2040383;SRR2040390;SRR2040393
Length	24
Mature sequence(if miRNA)	94 - ACUAACCGGGACUAAAGAUGAUCU - 117
Stem-loop(if miRNA)	--     C           --A                --------   G      G  A  GG   ACUAA CGGGACUAAAG   UGAUCUUUAGUCCCGG        UUC UGGCCU UC GA  C   ||||| |||||||||||   ||||||||||||||||        ||| |||||| || ||   UGGUU GCCCUGAUUUC   AUUAGAAAUCAGGGCC        AGG GCCGGA GG CU  A UG     A           ACC                UGAUUUCU   A      -  A  GU
Stem-loop sequence	ACUAACCGGGACUAAAGAUGAUCUUUAGUCCCGGUUCGUGGCCUGUCAGAGGCAUGUCAGGAGGCCGAGGAUCUUUAGUCCGGGACUAAAGAUUACCACUUUAGUCCCGAUUGGUGU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_015755884.1	ncRNA:24   UCUAGUAGAAAUCAGGGCCAAUCA   1   **||=||||||||||||||||=|| targets:1370   CAAUUAUCUUUAGUCCCGGUUGGU   1393 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group S-norcoclaurine synthase 1 (LOC4346830), mRNA	S-norcoclaurine synthase 1(LOC4346830)	coding protein	psRNATarget
AK288424.1	ncRNA:24   UCUAGUAGAAAUCAGGGCCAAUCA   1   |*||*||||||||||||||||||| targets:2377   AAAUGAUCUUUAGUCCCGGUUAGU   2400 Target Full Sequence	0.0	Oryza sativa Japonica Group cDNA, clone: J090032J12, full insert sequence	NA	coding protein	psRNATarget
HI404286.1	ncRNA:24   UCUAGUAGAAAUCAGGGCCAAUCA   1   =*||*||||||||||||||||||| targets:38   GCAUGAUCUUUAGUCCCGGUUAGU   61 Target Full Sequence	0.0	Sequence 2411 from Patent EP2074227	NA	coding protein	psRNATarget
JB164747.1	ncRNA:24   UCUAGUAGAAAUCAGGGCCAAUCA   1   =*||*||||||||||||||||||| targets:38   GCAUGAUCUUUAGUCCCGGUUAGU   61 Target Full Sequence	0.0	Sequence 2411 from Patent EP2559767	NA	coding protein	psRNATarget
LQ236416.1	ncRNA:24   UCUAGUAGAAAUCAGGGCCAAUCA   1   =*||*||||||||||||||||||| targets:38   GCAUGAUCUUUAGUCCCGGUUAGU   61 Target Full Sequence	0.0	Sequence 2411 from Patent EP2985353	NA	coding protein	psRNATarget
HI403921.1	ncRNA:24   UCUA----GUAGAAAUCAGGGCCAAUCA   1   ||||----=||||||||||||||||=|* targets:41   AGAUGUUUUAUCUUUAGUCCCGGUUGGG   68 Target Full Sequence	2.5	Sequence 2046 from Patent EP2074227	NA	coding protein	psRNATarget
JB164382.1	ncRNA:24   UCUA----GUAGAAAUCAGGGCCAAUCA   1   ||||----=||||||||||||||||=|* targets:41   AGAUGUUUUAUCUUUAGUCCCGGUUGGG   68 Target Full Sequence	2.5	Sequence 2046 from Patent EP2559767	NA	coding protein	psRNATarget
LQ236051.1	ncRNA:24   UCUA----GUAGAAAUCAGGGCCAAUCA   1   ||||----=||||||||||||||||=|* targets:41   AGAUGUUUUAUCUUUAGUCCCGGUUGGG   68 Target Full Sequence	2.5	Sequence 2046 from Patent EP2985353	NA	coding protein	psRNATarget
XM_015755256.1	ncRNA:24   UCUAGUAGAAAUCAGGGCCAAUCA   1   **||*||||||||||||||||=|| targets:139   UAAUGAUCUUUAGUCCCGGUUGGU   162 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4346665 (LOC4346665), transcript variant X2, mRNA	uncharacterized LOC4346665(LOC4346665)	coding protein	psRNATarget
XM_015779829.1	ncRNA:24   UCUAGUAGAAAUCAGGGCCAAUCA   1   ||=--||||||||||||||||=|| targets:1698   AGG--AUCUUUAGUCCCGGUUGGU   1719 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4335182 (LOC4335182), mRNA	uncharacterized LOC4335182(LOC4335182)	coding protein	psRNATarget
AK288463.1	ncRNA:24   UCUAGUAGAAAUCAGGGCCAAUCA   1   ||=--||||||||||||||||=|| targets:553   AGG--AUCUUUAGUCCCGGUUGGU   574 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA, clone: J090036E20, full insert sequence	NA	coding protein	psRNATarget
AK288624.1	ncRNA:24   UCU--------AGUAGAAAUCAGGGCCAAUCA   1   |||--------|=|||||||||*||||||||| targets:4941   AGACCCCUCAUUUAUCUUUAGUACCGGUUAGU   4972 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA, clone: J090054H14, full insert sequence	NA	coding protein	psRNATarget
AK061057.1	ncRNA:24   UCUAGUAGAAAUCAGGGCCAAUCA   1   |*||*|||||||||||||||||** targets:244   AAAUGAUCUUUAGUCCCGGUUAAA   267 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:006-205-H07, full insert sequence	NA	coding protein	psRNATarget
AK121178.1	ncRNA:24   UCUAGUAGAAAUCAGGGCCAAUCA   1   *||**||||||||||||||||=|| targets:1904   UGACGAUCUUUAGUCCCGGUUGGU   1927 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA clone:J023083G22, full insert sequence	NA	coding protein	psRNATarget
XM_015790121.1	ncRNA:24   UCUAGUAGAAAUCAGGGCCAAUCA   1   ***|*||||||||||||||||=|| targets:925   UUUUAAUCUUUAGUCCCGGUUGGU   948 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group putative disease resistance protein RGA4 (LOC107281518), transcript variant X2, mRNA	putative disease resistance protein RGA4(LOC107281518)	coding protein	psRNATarget
XM_015790121.1	ncRNA:24   UCUAGUAGAAAUCAGGGCCAAUCA   1   *|*|*||||||||||||||||=|* targets:969   UGCUGAUCUUUAGUCCCGGUUGGA   992 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group putative disease resistance protein RGA4 (LOC107281518), transcript variant X2, mRNA	putative disease resistance protein RGA4(LOC107281518)	coding protein	psRNATarget
AK066662.1	ncRNA:24   UCUA-GUAGAAAUCAGGGCCAAUCA   1   |*||-=||||||||||||||||*|| targets:650   AAAUGUAUCUUUAGUCCCGGUUCGU   674 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA clone:J013071A17, full insert sequence	NA	coding protein	psRNATarget
AK288224.1	ncRNA:24   UCUAGUAGAAAUCAGGGCCAAUCA   1   *|=|-|||||||||||||||||*| targets:1872   CGGU-AUCUUUAGUCCCGGUUAUU   1894 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA, clone: J090012B15, full insert sequence	NA	coding protein	psRNATarget