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BaseInfo

ncRNA ID novel_osa_miR2947
Species Oryza sativa
Class miRNA
Genome position Chr2:33026213-33026368 [-]
Reference genome IRGSP-1.0
Source SRR2040383;SRR2857729
Length 24
Mature sequence(if miRNA) 1 - GAAUAUGAGAAAUGUUAGAAUGAC - 24
Stem-loop(if miRNA) --                          UUAUAU                   C       GCAUU  CCAU      AUUG
  CAUUCUAACAUUUCUCAUAUUCAUAU      UGAUGGUAAUGAAUCUAGA AUAUAUA     UC    AUUCAU    A
  ||||||||||||||||||||||||||      ||||||||||||||||||| |||||||     ||    ||||||
  GUAAGAUUGUAAAGAGUAUAAGUAUA      ACUACCAUUACUUAGAUCU UAUAUAU     AG    UAAGUA    U
CA                          ------                   A       -AGAU  -AUC      AUUA
Stem-loop sequence CAUUCUAACAUUUCUCAUAUUCAUAUUUAUAUUGAUGGUAAUGAAUCUAGACAUAUAUAGCAUUUCCCAUAUUCAUAUUGAUAUUAAUGAAUCUAGAUAGAUAUAUAUAUCUAGAUUCAUUACCAUCAAUAUGAAUAUGAGAAAUGUUAGAAUGAC

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_015793334.1
ncRNA:24   CAGUAAGAUUGUAAAGAGUAUAAG   1
  |||||||||||||||=||||||||
targets:1734   GUCAUUCUAACAUUUUUCAUAUUC   1757

1.5 PREDICTED: Oryza sativa Japonica Group transcription factor bHLH112 (LOC9271688), transcript variant X1, mRNA transcription factor bHLH112(LOC9271688) coding protein psRNATarget
XM_015793335.1
ncRNA:24   CAGUAAGAUUGUAAAGAGUAUAAG   1
  |||||||||||||||=||||||||
targets:1716   GUCAUUCUAACAUUUUUCAUAUUC   1739

1.5 PREDICTED: Oryza sativa Japonica Group transcription factor bHLH112 (LOC9271688), transcript variant X2, mRNA transcription factor bHLH112(LOC9271688) coding protein psRNATarget
XM_015793336.1
ncRNA:24   CAGUAAGAUUGUAAAGAGUAUAAG   1
  |||||||||||||||=||||||||
targets:1563   GUCAUUCUAACAUUUUUCAUAUUC   1586

1.5 PREDICTED: Oryza sativa Japonica Group transcription factor bHLH112 (LOC9271688), transcript variant X3, mRNA transcription factor bHLH112(LOC9271688) coding protein psRNATarget
XM_015795314.1
ncRNA:24   CAGUAAGAUUGUAAAGAGUAUAAG   1
  ||||||||==||||||||||||||
targets:1742   GUCAUUCUGGCAUUUCUCAUAUUC   1765

2.0 PREDICTED: Oryza sativa Japonica Group cytochrome P450 89A2 (LOC4344671), mRNA cytochrome P450 89A2(LOC4344671) coding protein psRNATarget
AK288502.1
ncRNA:24   CAGUAAGAUUGUAAAGAGUAUAAG   1
  |||||||||=|||||||||||||=
targets:565   GUCAUUCUAGCAUUUCUCAUAUUU   588

2.0 Oryza sativa Japonica Group cDNA, clone: J090041D12, full insert sequence NA coding protein psRNATarget
CT831392.1
ncRNA:24   CAGUAAGAUUGUAAAGAGUAUAAG   1
  |||||||||=|||||=||||||||
targets:413   GUCAUUCUAGCAUUUUUCAUAUUC   436

2.5 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSN035F20, full insert sequence NA coding protein psRNATarget
CT833789.1
ncRNA:24   CAGUAAGAUUGUAAAGAGUAUAAG   1
  |||||||||==|||||||||||||
targets:366   GUCAUUCUAGUAUUUCUCAUAUUC   389

2.0 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSN032F14, full insert sequence NA coding protein psRNATarget
XM_015767720.1
ncRNA:24   CAGUAAGAUUGUAAAGAGUAUAAG   1
  |||||||||=|||||||||||||=
targets:566   GUCAUUCUAGCAUUUCUCAUAUUU   589

2.0 PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4330679 (LOC4330679), mRNA uncharacterized LOC4330679(LOC4330679) coding protein psRNATarget
CT833788.1
ncRNA:24   CAGUAAGAUUGUAAAGAGUAUAAG   1
  |||||||||==|||||||||||||
targets:367   GUCAUUCUAGUAUUUCUCAUAUUC   390

2.0 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSA058L20, full insert sequence NA coding protein psRNATarget
XM_015766661.1
ncRNA:24   CAGUAAGAUUGUAAAGAGUAUAAG   1
  |||||||||*||||||||||||||
targets:5120   GUCAUUCUAUCAUUUCUCAUAUUC   5143

1.0 PREDICTED: Oryza sativa Japonica Group glycerol-3-phosphate 2-O-acyltransferase 6 (LOC4324826), transcript variant X3, mRNA glycerol-3-phosphate 2-O-acyltransferase 6(LOC4324826) coding protein psRNATarget
XM_015766659.1
ncRNA:24   CAGUAAGAUUGUAAAGAGUAUAAG   1
  |||||||||*||||||||||||||
targets:5087   GUCAUUCUAUCAUUUCUCAUAUUC   5110

1.0 PREDICTED: Oryza sativa Japonica Group glycerol-3-phosphate 2-O-acyltransferase 6 (LOC4324826), transcript variant X1, mRNA glycerol-3-phosphate 2-O-acyltransferase 6(LOC4324826) coding protein psRNATarget
XM_015766663.1
ncRNA:24   CAGUAAGAUUGUAAAGAGUAUAAG   1
  |||||||||*||||||||||||||
targets:4999   GUCAUUCUAUCAUUUCUCAUAUUC   5022

1.0 PREDICTED: Oryza sativa Japonica Group glycerol-3-phosphate 2-O-acyltransferase 6 (LOC4324826), transcript variant X5, mRNA glycerol-3-phosphate 2-O-acyltransferase 6(LOC4324826) coding protein psRNATarget
AK289050.1
ncRNA:24   CAGUAAGAUUGUAAAGAGUAUAAG   1
  ||=||||||=|||||||=||||||
targets:4371   GUUAUUCUAGCAUUUCUUAUAUUC   4394

2.5 Oryza sativa Japonica Group cDNA, clone: J090092O13, full insert sequence NA coding protein psRNATarget
XM_015766660.1
ncRNA:24   CAGUAAGAUUGUAAAGAGUAUAAG   1
  |||||||||*||||||||||||||
targets:4459   GUCAUUCUAUCAUUUCUCAUAUUC   4482

1.0 PREDICTED: Oryza sativa Japonica Group glycerol-3-phosphate 2-O-acyltransferase 6 (LOC4324826), transcript variant X2, mRNA glycerol-3-phosphate 2-O-acyltransferase 6(LOC4324826) coding protein psRNATarget
XM_015766662.1
ncRNA:24   CAGUAAGAUUGUAAAGAGUAUAAG   1
  |||||||||*||||||||||||||
targets:4427   GUCAUUCUAUCAUUUCUCAUAUUC   4450

1.0 PREDICTED: Oryza sativa Japonica Group glycerol-3-phosphate 2-O-acyltransferase 6 (LOC4324826), transcript variant X4, mRNA glycerol-3-phosphate 2-O-acyltransferase 6(LOC4324826) coding protein psRNATarget
XM_015766665.1
ncRNA:24   CAGUAAGAUUGUAAAGAGUAUAAG   1
  |||||||||*||||||||||||||
targets:4170   GUCAUUCUAUCAUUUCUCAUAUUC   4193

1.0 PREDICTED: Oryza sativa Japonica Group glycerol-3-phosphate 2-O-acyltransferase 6 (LOC4324826), transcript variant X7, mRNA glycerol-3-phosphate 2-O-acyltransferase 6(LOC4324826) coding protein psRNATarget
XM_015766664.1
ncRNA:24   CAGUAAGAUUGUAAAGAGUAUAAG   1
  |||||||||*||||||||||||||
targets:3750   GUCAUUCUAUCAUUUCUCAUAUUC   3773

1.0 PREDICTED: Oryza sativa Japonica Group glycerol-3-phosphate 2-O-acyltransferase 6 (LOC4324826), transcript variant X6, mRNA glycerol-3-phosphate 2-O-acyltransferase 6(LOC4324826) coding protein psRNATarget
XM_015790773.1
ncRNA:24   CAGUAAGAUUGUAAAGAGUAUAAG   1
  |||||||||*||||||||||||||
targets:1225   GUCAUUCUAUCAUUUCUCAUAUUC   1248

1.0 PREDICTED: Oryza sativa Japonica Group peroxidase 1-like (LOC107275918), mRNA peroxidase 1-like(LOC107275918) coding protein psRNATarget
XM_015774602.1
ncRNA:24   CAGUAAGAUUGUAAAGAGUAUAAG   1
  *||||||||=|||||=||||||||
targets:1009   AUCAUUCUAGCAUUUUUCAUAUUC   1032

2.5 PREDICTED: Oryza sativa Japonica Group protein app1 (LOC4334321), mRNA protein app1(LOC4334321) coding protein psRNATarget
CT832752.1
ncRNA:24   CAGUAAGAUUGUAAAGAGUAUAAG   1
  *||||||||=|||||=||||||||
targets:946   AUCAUUCUAGCAUUUUUCAUAUUC   969

2.5 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSN011H19, full insert sequence NA coding protein psRNATarget
AK069119.1
ncRNA:24   CAGUAAGAUUGUAAAGAGUAUAAG   1
  *||||||||=|||||=||||||||
targets:978   AUCAUUCUAGCAUUUUUCAUAUUC   1001

2.5 Oryza sativa Japonica Group cDNA clone:J023003A19, full insert sequence NA coding protein psRNATarget
CT834553.1
ncRNA:24   CAGUAAGAUUGUAAAGAGUAUAAG   1
  *||||||||=|||||=||||||||
targets:882   AUCAUUCUAGCAUUUUUCAUAUUC   905

2.5 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSA018G24, full insert sequence NA coding protein psRNATarget
XM_015764779.1
ncRNA:24   CAGUAAGAUUGUAAAGAGUAUAAG   1
  |||||||||=|||||||||*||||
targets:4398   GUCAUUCUAGCAUUUCUCACAUUC   4421

2.5 PREDICTED: Oryza sativa Japonica Group putative disease resistance RPP13-like protein 3 (LOC4352543), transcript variant X4, mRNA putative disease resistance RPP13-like protein 3(LOC4352543) coding protein psRNATarget
XM_015764777.1
ncRNA:24   CAGUAAGAUUGUAAAGAGUAUAAG   1
  |||||||||=|||||||||*||||
targets:3564   GUCAUUCUAGCAUUUCUCACAUUC   3587

2.5 PREDICTED: Oryza sativa Japonica Group putative disease resistance RPP13-like protein 3 (LOC4352543), transcript variant X2, mRNA putative disease resistance RPP13-like protein 3(LOC4352543) coding protein psRNATarget
XM_015764776.1
ncRNA:24   CAGUAAGAUUGUAAAGAGUAUAAG   1
  |||||||||=|||||||||*||||
targets:3328   GUCAUUCUAGCAUUUCUCACAUUC   3351

2.5 PREDICTED: Oryza sativa Japonica Group putative disease resistance RPP13-like protein 3 (LOC4352543), transcript variant X1, mRNA putative disease resistance RPP13-like protein 3(LOC4352543) coding protein psRNATarget
XM_015764778.1
ncRNA:24   CAGUAAGAUUGUAAAGAGUAUAAG   1
  |||||||||=|||||||||*||||
targets:3323   GUCAUUCUAGCAUUUCUCACAUUC   3346

2.5 PREDICTED: Oryza sativa Japonica Group putative disease resistance RPP13-like protein 3 (LOC4352543), transcript variant X3, mRNA putative disease resistance RPP13-like protein 3(LOC4352543) coding protein psRNATarget
AK070550.1
ncRNA:24   CAGUAAGAUUGUAAAGAGUAUAAG   1
  |||||||||=||||||*|||||||
targets:2617   GUCAUUCUAGCAUUUCCCAUAUUC   2640

2.5 Oryza sativa Japonica Group cDNA clone:J023061C04, full insert sequence NA coding protein psRNATarget
AK288266.1
ncRNA:24   CAGUAAGAUUGUAAAGAGUAUAAG   1
  |*|||||||=||||||||||||||
targets:1541   GCCAUUCUAGCAUUUCUCAUAUUC   1564

1.0 Oryza sativa Japonica Group cDNA, clone: J090016H18, full insert sequence NA coding protein psRNATarget
AK120148.1
ncRNA:24   CAGUAAGAUUGUAAAGAGUAUAAG   1
  |||||||||=|||||||||*||||
targets:464   GUCAUUCUAGCAUUUCUCACAUUC   487

2.5 Oryza sativa Japonica Group cDNA clone:J013029J05, full insert sequence NA coding protein psRNATarget
AK099623.1
ncRNA:24   CAGUAAGAUUGUAAAGAGUAUAAG   1
  |||||||||=||||||*|||||||
targets:86   GUCAUUCUAGCAUUUCCCAUAUUC   109

2.5 Oryza sativa Japonica Group cDNA clone:J013053G12, full insert sequence NA coding protein psRNATarget
CT837528.1
ncRNA:24   CAGUAAGAUUGUAAAGAGUAUAAG   1
  |||||||||=|||||||||*||||
targets:829   GUCAUUCUAGCAUUUCUCACAUUC   852

2.5 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSN037B21, full insert sequence NA coding protein psRNATarget
CT829159.1
ncRNA:24   CAGUAAGAUUGUAAAGAGUAUAAG   1
  ||=-|||||=||||*|||||||||
targets:513   GUU-UUCUAGCAUUACUCAUAUUC   535

2.5 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSN009P22, full insert sequence NA coding protein psRNATarget
XM_015767952.1
ncRNA:24   CAGUAAGAUUGUAAAGAGUAUAAG   1
  **|*||||||||||*|||||||||
targets:1790   AACUUUCUAACAUUGCUCAUAUUC   1813

1.5 PREDICTED: Oryza sativa Japonica Group probable galacturonosyltransferase 9 (LOC4330716), mRNA probable galacturonosyltransferase 9(LOC4330716) coding protein psRNATarget
XM_015766546.1
ncRNA:24   CAGUAAGAUUGUAAAGAGUAUAAG   1
  |*|*|||||=||||||*|||||||
targets:2699   GACUUUCUAGCAUUUCCCAUAUUC   2722

2.5 PREDICTED: Oryza sativa Japonica Group probable LRR receptor-like serine/threonine-protein kinase IRK (LOC4327614), transcript variant X1, mRNA probable LRR receptor-like serine/threonine-protein kinase IRK(LOC4327614) coding protein psRNATarget
XM_015766550.1
ncRNA:24   CAGUAAGAUUGUAAAGAGUAUAAG   1
  |*|*|||||=||||||*|||||||
targets:2699   GACUUUCUAGCAUUUCCCAUAUUC   2722

2.5 PREDICTED: Oryza sativa Japonica Group probable LRR receptor-like serine/threonine-protein kinase IRK (LOC4327614), transcript variant X4, mRNA probable LRR receptor-like serine/threonine-protein kinase IRK(LOC4327614) coding protein psRNATarget
XM_015766551.1
ncRNA:24   CAGUAAGAUUGUAAAGAGUAUAAG   1
  |*|*|||||=||||||*|||||||
targets:2699   GACUUUCUAGCAUUUCCCAUAUUC   2722

2.5 PREDICTED: Oryza sativa Japonica Group probable LRR receptor-like serine/threonine-protein kinase IRK (LOC4327614), transcript variant X5, mRNA probable LRR receptor-like serine/threonine-protein kinase IRK(LOC4327614) coding protein psRNATarget
XM_015766549.1
ncRNA:24   CAGUAAGAUUGUAAAGAGUAUAAG   1
  |*|*|||||=||||||*|||||||
targets:2333   GACUUUCUAGCAUUUCCCAUAUUC   2356

2.5 PREDICTED: Oryza sativa Japonica Group probable LRR receptor-like serine/threonine-protein kinase IRK (LOC4327614), transcript variant X3, mRNA probable LRR receptor-like serine/threonine-protein kinase IRK(LOC4327614) coding protein psRNATarget
XM_015766552.1
ncRNA:24   CAGUAAGAUUGUAAAGAGUAUAAG   1
  |*|*|||||=||||||*|||||||
targets:1719   GACUUUCUAGCAUUUCCCAUAUUC   1742

2.5 PREDICTED: Oryza sativa Japonica Group probable LRR receptor-like serine/threonine-protein kinase IRK (LOC4327614), transcript variant X6, mRNA probable LRR receptor-like serine/threonine-protein kinase IRK(LOC4327614) coding protein psRNATarget
XM_015766553.1
ncRNA:24   CAGUAAGAUUGUAAAGAGUAUAAG   1
  |*|*|||||=||||||*|||||||
targets:529   GACUUUCUAGCAUUUCCCAUAUUC   552

2.5 PREDICTED: Oryza sativa Japonica Group probable LRR receptor-like serine/threonine-protein kinase IRK (LOC4327614), transcript variant X7, mRNA probable LRR receptor-like serine/threonine-protein kinase IRK(LOC4327614) coding protein psRNATarget
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