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BaseInfo

ncRNA ID novel_osa_miR2946
Species Oryza sativa
Class miRNA
Genome position Chr10:399475-399520 [+]
Reference genome IRGSP-1.0
Source SRR2040383;SRR2040384;SRR2040387;SRR2040389;SRR2040393;SRR2040396;SRR2040398;SRR2040399;SRR2040408;SRR2040410
Length 21
Mature sequence(if miRNA) 1 - CGGAGAGAACUACCCAAGCCU - 21
Stem-loop(if miRNA) --C   G          A  CCU
   GGA AGAACUACCC AG   C
   ||| |||||||||| ||   G
   CCU UCUUGAUGGG UC   A
CUU   -          A  ACU
Stem-loop sequence CGGAGAGAACUACCCAAGCCUCGAUCACUAGGGUAGUUCUUCCUUC

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
AK288317.1
ncRNA:21   UCCGAACCCAUCAAGAGAGGC   1
  |||||||||||||*|||||||
targets:2061   AGGCUUGGGUAGUCCUCUCCG   2081

1.5 Oryza sativa Japonica Group cDNA, clone: J090021K08, full insert sequence NA coding protein psRNATarget