Search result

BaseInfo

ncRNA ID	novel_osa_miR2944
Species	Oryza sativa
Class	miRNA
Genome position	Chr2:14819578-14819701 [+]
Reference genome	IRGSP-1.0
Source	SRR2040383;SRR2040410;SRR2040411;SRR1738224
Length	24
Mature sequence(if miRNA)	101 - UAAAUUCGUCUCGCGGUUUCUAGG - 124
Stem-loop(if miRNA)	--UGA                CUU   A A       G  CAUA    G         CUAC      AAAUCGUGAGACGAAU   UUA G CUAAUUA UC    AUUA CCAUAUGUG    A      ||||||||||||||||   ||| | ||||||| ||    |||| |||||||||    G      UUUGGCGCUCUGCUUA   AAU C GAUUAAU AG    UAAU GGUAUACAC    U GGAUC                AAU   A G       A  ACAG    -         CCAA
Stem-loop sequence	UGAAAAUCGUGAGACGAAUCUUUUAAGACUAAUUAGUCCAUAAUUAGCCAUAUGUGCUACAGUAACCCACAUAUGGUAAUGACAGAAUAAUUAGGCAUAAUAAAUUCGUCUCGCGGUUUCUAGG

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
AK288820.1	ncRNA:24   GGAUCUUUGGCGCUCUGCUUAAAU   1   |||=|||||||||||||||||||* targets:3010   CCUGGAAACCGCGAGACGAAUUUU   3033 Target Full Sequence	1.0	Oryza sativa Japonica Group cDNA, clone: J090073D04, full insert sequence	NA	coding protein	psRNATarget
AK103318.1	ncRNA:24   GGAUCUUUGGCGCUCUGCUUAAAU   1   =||=||||||||||||||||||*| targets:1061   UCUGGAAACCGCGAGACGAAUUAA   1084 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA clone:J033125I08, full insert sequence	NA	coding protein	psRNATarget
AK288995.1	ncRNA:24   GGAUC-UUUGGCGCUCUGCUUAAAU   1   *=|||-||||||||||||||||||| targets:1321   AUUAGUAAACCGCGAGACGAAUUUA   1345 Target Full Sequence	2.0	Oryza sativa Japonica Group cDNA, clone: J090088A20, full insert sequence	NA	coding protein	psRNATarget
AK288948.1	ncRNA:24   GGAUCUUUGGCGCUCUGCUUAAAU   1   |||=*||||=|||||||||||||| targets:436   CCUGUAAACUGCGAGACGAAUUUA   459 Target Full Sequence	1.0	Oryza sativa Japonica Group cDNA, clone: J090083I09, full insert sequence	NA	coding protein	psRNATarget
XM_015773694.1	ncRNA:24   GGAUCUUUGGCGCUCUGCUUAAAU   1   |||=*||||=|||||||||||||| targets:750   CCUGUAAACUGCGAGACGAAUUUA   773 Target Full Sequence	1.0	PREDICTED: Oryza sativa Japonica Group putative ubiquitin-like-specific protease 1B (LOC9268223), transcript variant X2, mRNA	putative ubiquitin-like-specific protease 1B(LOC9268223)	coding protein	psRNATarget
AK120234.1	ncRNA:24   GGAUCUUUGGCGCUCUGCUUAAAU   1   |||=*||||=|||||||||||||| targets:2414   CCUGUAAACUGCGAGACGAAUUUA   2437 Target Full Sequence	1.0	Oryza sativa Japonica Group cDNA clone:J013043L17, full insert sequence	NA	coding protein	psRNATarget
AK099802.1	ncRNA:24   GGAUCUUUGGCGCUCUGCUUAAAU   1   |||=*||||=|||||||||||||| targets:756   CCUGUAAACUGCGAGACGAAUUUA   779 Target Full Sequence	1.0	Oryza sativa Japonica Group cDNA clone:J013098A22, full insert sequence	NA	coding protein	psRNATarget
AK100778.1	ncRNA:24   GGAUCUUUGGCGCUCUGCUUAAAU   1   ||||*||||=|=|||||||||||| targets:1503   CCUAUAAACUGUGAGACGAAUUUA   1526 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:J023120F15, full insert sequence	NA	coding protein	psRNATarget
AK067512.1	ncRNA:24   GGAUCUUUGGCGCUCUGCUUAAAU   1   |=|=||||||||*||||||||||| targets:1095   CUUGGAAACCGCAAGACGAAUUUA   1118 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA clone:J013109G08, full insert sequence	NA	coding protein	psRNATarget
AK288942.1	ncRNA:24   GGAUCUUUGGCGCUCUGCUUAAAU   1   ||*=|||||=|||||||||||||| targets:3278   CCAGGAAACUGCGAGACGAAUUUA   3301 Target Full Sequence	1.0	Oryza sativa Japonica Group cDNA, clone: J090083D07, full insert sequence	NA	coding protein	psRNATarget
CT837948.1	ncRNA:24   GGAUCUUUGGCGCUCUGCUUAAAU   1   ||*=|||||=|||=|||||||||| targets:503   CCAGGAAACUGCGGGACGAAUUUA   526 Target Full Sequence	2.5	Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSN008C05, full insert sequence	NA	coding protein	psRNATarget
XM_015789194.1	ncRNA:24   GGAUCUUUGGCGCUCUGCUUAAAU   1   |||=*||||=|||||||||=|||| targets:2127   CCUGUAAACUGCGAGACGAGUUUA   2150 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group AUGMIN subunit 3 (LOC4342590), mRNA	AUGMIN subunit 3(LOC4342590)	coding protein	psRNATarget
AK070572.1	ncRNA:24   GGAUCUUUGGCGCUCUGCUUAAAU   1   |||=*||||=|||||||||=|||| targets:2122   CCUGUAAACUGCGAGACGAGUUUA   2145 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:J023055P17, full insert sequence	NA	coding protein	psRNATarget
AK099773.1	ncRNA:24   GGAUCUUUGGCGCUCUGCUUAAAU   1   |||=*||||=|=|||||||||||| targets:628   CCUGUAAACUGUGAGACGAAUUUA   651 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:J013095E04, full insert sequence	NA	coding protein	psRNATarget
AK065510.1	ncRNA:24   GGAUCUUUGGCGCUCUGCUUAAAU   1   |||=*||||=|=|||||||||||| targets:698   CCUGUAAACUGUGAGACGAAUUUA   721 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:J013030L03, full insert sequence	NA	coding protein	psRNATarget
AK072341.1	ncRNA:24   GGAUCUUUGGCGCUCUGCUUAAAU   1   |*|=*||||||||||||||||||| targets:2304   CAUGUAAACCGCGAGACGAAUUUA   2327 Target Full Sequence	0.0	Oryza sativa Japonica Group cDNA clone:J023052M08, full insert sequence	NA	coding protein	psRNATarget
AK120109.1	ncRNA:24   GGAUCUUUGGCGCUCUGCUUAAAU   1   =|*|*||||||||||||||||||| targets:1867   UCAAUAAACCGCGAGACGAAUUUA   1890 Target Full Sequence	0.0	Oryza sativa Japonica Group cDNA clone:J013023O17, full insert sequence	NA	coding protein	psRNATarget
AK065982.1	ncRNA:24   GGAUCUUUGGCGCUCUGCUUAAAU   1   ||||*||||=|||||||||||*|| targets:2782   CCUAUAAACUGCGAGACGAAUCUA   2805 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:J013045J05, full insert sequence	NA	coding protein	psRNATarget
AK289079.1	ncRNA:24   GGAUCUUUGGCGCUCUGCUUAAAU   1   |=||||||||*||||||*|||||| targets:571   CUUAGAAACCACGAGACAAAUUUA   594 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J090095C15, full insert sequence	NA	coding protein	psRNATarget
AK067087.1	ncRNA:24   GGAUCUUUGGCGCUCUGCUUAAAU   1   =|*|*||||||||||||||||||| targets:1866   UCAAUAAACCGCGAGACGAAUUUA   1889 Target Full Sequence	0.0	Oryza sativa Japonica Group cDNA clone:J013095A19, full insert sequence	NA	coding protein	psRNATarget
AK287702.1	ncRNA:24   GGAUCUUUGGCGCUCUGCUUAAAU   1   ==|=*||||=|||||||||||||| targets:1264   UUUGUAAACUGCGAGACGAAUUUA   1287 Target Full Sequence	1.0	Oryza sativa Japonica Group cDNA, clone: J065131D02, full insert sequence	NA	coding protein	psRNATarget
AK288279.1	ncRNA:24   GGAUCUUUGGCGCUCUGCUUAAAU   1   =||=*||||=||||||=||||||| targets:5605   UCUGUAAACUGCGAGAUGAAUUUA   5628 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J090017N13, full insert sequence	NA	coding protein	psRNATarget
AK102878.1	ncRNA:24   GGAUCUUUGGCGCUCUGCUUAAAU   1   |=||*||||=|||||||||||*|| targets:2039   CUUAUAAACUGCGAGACGAAUCUA   2062 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:J033112G02, full insert sequence	NA	coding protein	psRNATarget
XM_015785585.1	ncRNA:24   GGAUCUUUGGCGCUCUGCUUAAAU   1   |=||*||||=|||||||||||*|| targets:2110   CUUAUAAACUGCGAGACGAAUCUA   2133 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group external alternative NAD(P)H-ubiquinone oxidoreductase B1, mitochondrial (LOC4341876), transcript variant X2, mRNA	external alternative NAD(P)H-ubiquinone oxidoreductase B1, mitochondrial(LOC4341876)	coding protein	psRNATarget
XM_015785584.1	ncRNA:24   GGAUCUUUGGCGCUCUGCUUAAAU   1   |=||*||||=|||||||||||*|| targets:2243   CUUAUAAACUGCGAGACGAAUCUA   2266 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group external alternative NAD(P)H-ubiquinone oxidoreductase B1, mitochondrial (LOC4341876), transcript variant X1, mRNA	external alternative NAD(P)H-ubiquinone oxidoreductase B1, mitochondrial(LOC4341876)	coding protein	psRNATarget
AK103572.1	ncRNA:24   GGAUCUUUGGCGCUCUGCUUAAAU   1   |=||*||||=|||||||||||*|| targets:2721   CUUAUAAACUGCGAGACGAAUCUA   2744 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:J033132N13, full insert sequence	NA	coding protein	psRNATarget
XM_015784558.1	ncRNA:24   GGAUCUUUGGCGCUCUGCUUAAAU   1   =|*|*||||=|||||||||||||| targets:4083   UCAAUAAACUGCGAGACGAAUUUA   4106 Target Full Sequence	1.0	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC9270232 (LOC9270232), mRNA	uncharacterized LOC9270232(LOC9270232)	coding protein	psRNATarget
AK288772.1	ncRNA:24   GGAUC-UUUGGCGCUCUGCUUAAAU   1   *=|||-|||||*||||||||||||| targets:92   GUUAGUAAACCACGAGACGAAUUUA   116 Target Full Sequence	3.0	Oryza sativa Japonica Group cDNA, clone: J090068C09, full insert sequence	NA	coding protein	psRNATarget
AK072161.1	ncRNA:24   GGAUC-UUUGGCGCUCUGCUUAAAU   1   ***||-||||=|||||||||||||| targets:1022   GGCAGUAAACUGCGAGACGAAUUUA   1046 Target Full Sequence	3.0	Oryza sativa Japonica Group cDNA clone:J013132P06, full insert sequence	NA	coding protein	psRNATarget
XM_015773668.1	ncRNA:24   GGAUCUUUGGCGCUCUGCUUAAAU   1   =|||*|||==*||||||||||||| targets:1709   UCUAUAAAUUACGAGACGAAUUUA   1732 Target Full Sequence	3.0	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC9269613 (LOC9269613), mRNA	uncharacterized LOC9269613(LOC9269613)	coding protein	psRNATarget
AK101107.1	ncRNA:24   GG-AU--CUUUGGCGCUCUGCUUAAAU   1   ||-||--|||||=|||||||*|||||| targets:1756   CCGUAAGGAAACUGCGAGACAAAUUUA   1782 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:J033025D23, full insert sequence	NA	coding protein	psRNATarget
AK069221.1	ncRNA:24   GGAUCUUUGGCGCUCUGCUUAAAU   1   =||=*||||=||||*||||||||| targets:511   UCUGUAAACUGCGAUACGAAUUUA   534 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:J023018E21, full insert sequence	NA	coding protein	psRNATarget
XM_015791223.1	ncRNA:24   GGAUCUUUGGCGCUCUGCUUAAAU   1   =||=*||||=||||*||||||||| targets:1669   UCUGUAAACUGCGAUACGAAUUUA   1692 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group pentatricopeptide repeat-containing protein At1g01970 (LOC4344187), transcript variant X1, mRNA	pentatricopeptide repeat-containing protein At1g01970(LOC4344187)	coding protein	psRNATarget
AK289087.1	ncRNA:24   GGA---UC-UUUGGCGCUCUGCUUAAAU   1   =||---||-|||||*||||||||||||| targets:22   UCUGUCAGUAAACCUCGAGACGAAUUUA   49 Target Full Sequence	3.0	Oryza sativa Japonica Group cDNA, clone: J090095K03, full insert sequence	NA	coding protein	psRNATarget
HI403831.1	ncRNA:21   UCUUUGGCGCUCUGCUUAAAU   1   =*|=||=|||||||||||||| targets:1   GUAGACUGCGAGACGAAUUUA   21 Target Full Sequence	2.0	Sequence 1956 from Patent EP2074227	NA	coding protein	psRNATarget
LQ235961.1	ncRNA:21   UCUUUGGCGCUCUGCUUAAAU   1   =*|=||=|||||||||||||| targets:1   GUAGACUGCGAGACGAAUUUA   21 Target Full Sequence	2.0	Sequence 1956 from Patent EP2985353	NA	coding protein	psRNATarget
JB164292.1	ncRNA:21   UCUUUGGCGCUCUGCUUAAAU   1   =*|=||=|||||||||||||| targets:1   GUAGACUGCGAGACGAAUUUA   21 Target Full Sequence	2.0	Sequence 1956 from Patent EP2559767	NA	coding protein	psRNATarget
LQ236633.1	ncRNA:21   UCUUUGGCGCUCUGCUUAAAU   1   =*|||||*||||||||||||| targets:1   GUAAACCACGAGACGAAUUUA   21 Target Full Sequence	1.0	Sequence 2628 from Patent EP2985353	NA	coding protein	psRNATarget
HI404503.1	ncRNA:21   UCUUUGGCGCUCUGCUUAAAU   1   =*|||||*||||||||||||| targets:1   GUAAACCACGAGACGAAUUUA   21 Target Full Sequence	1.0	Sequence 2628 from Patent EP2074227	NA	coding protein	psRNATarget
JB164964.1	ncRNA:21   UCUUUGGCGCUCUGCUUAAAU   1   =*|||||*||||||||||||| targets:1   GUAAACCACGAGACGAAUUUA   21 Target Full Sequence	1.0	Sequence 2628 from Patent EP2559767	NA	coding protein	psRNATarget
CT837715.1	ncRNA:24   GGAUCUUUGGCGCUCUGCUUAAAU   1   =|*=*||||*|||||||||||||| targets:1199   UCGGUAAACAGCGAGACGAAUUUA   1222 Target Full Sequence	1.0	Oryza sativa (indica cultivar-group) cDNA clone:OSIGCPI232H20, full insert sequence	NA	coding protein	psRNATarget
CT837714.1	ncRNA:24   GGAUCUUUGGCGCUCUGCUUAAAU   1   =|*=*||||*|||||||||||||| targets:1791   UCGGUAAACAGCGAGACGAAUUUA   1814 Target Full Sequence	1.0	Oryza sativa (indica cultivar-group) cDNA clone:OSIGCPI226D21, full insert sequence	NA	coding protein	psRNATarget
AK288305.1	ncRNA:24   GGAUCUUUGGCGCUCUGCUUAAAU   1   =|*=*||||||||||||*|||||| targets:456   UCGGUAAACCGCGAGACAAAUUUA   479 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA, clone: J090020F20, full insert sequence	NA	coding protein	psRNATarget