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BaseInfo

ncRNA ID novel_osa_miR2943
Species Oryza sativa
Class miRNA
Genome position Chr7:21829718-21829934 [-]
Reference genome IRGSP-1.0
Source SRR1555747;SRR1556020
Length 24
Mature sequence(if miRNA) 1 - AAACGACUUAUAAUAUUAAAUGGA - 24
Stem-loop(if miRNA) --     C                 AUUUUUUUU   CAAUU      A    GU            UAAAAAA    CAACAUUUAAAAUAUCAAAUUAGUUUCGUUAAACCUAGCA
  UAUUU AUAUUAUAAGUCGUUUG         UCA     AACUUU UUAA  UUGAUCAAGUUU       UUAG                                        U
  ||||| |||||||||||||||||         |||     |||||| ||||  ||||||||||||       ||||
  GUAAA UAUAAUAUUCAGCAAAC         AGU     UUGAAA AAUU  AAUUGGUUUAAA       UGAU                                        U
AG     U                 ---------   -----      -    UG            ----UCA    CAAAAAAGUUGUGUUUUGUUUGUAUAAUAGUUUUAUAAAA
Stem-loop sequence UAUUUCAUAUUAUAAGUCGUUUGAUUUUUUUUUCACAAUUAACUUUAUUAAGUUUGAUCAAGUUUUAAAAAAUUAGCAACAUUUAAAAUAUCAAAUUAGUUUCGUUAAACCUAGCAUUAAAAUAUUUUGAUAAUAUGUUUGUUUUGUGUUGAAAAAACUAGUACUAAAUUUGGUUAAGUUUAAAAAGUUUGACAAACGACUUAUAAUAUUAAAUGGA

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_015767715.1
ncRNA:24   AGGUAAAUUAUAAUAUUCAGCAAA   1
  |||||||*||||||||||||||||
targets:2672   UCCAUUUCAUAUUAUAAGUCGUUU   2695

1.0 PREDICTED: Oryza sativa Japonica Group chaperone protein ClpB1-like (LOC107276891), mRNA chaperone protein ClpB1-like(LOC107276891) coding protein psRNATarget
AK288895.1
ncRNA:24   AGGUAAAUUAUAAUAUUCAGCAAA   1
  |||||||*||||||||||||||||
targets:3178   UCCAUUUCAUAUUAUAAGUCGUUU   3201

1.0 Oryza sativa Japonica Group cDNA, clone: J090080F08, full insert sequence NA coding protein psRNATarget
AK240728.1
ncRNA:24   AGGUAAAUUAUAAUAUUCAGCAAA   1
  |||||||*||||||||||||||||
targets:1051   UCCAUUUUAUAUUAUAAGUCGUUU   1074

1.0 Oryza sativa Japonica Group cDNA, clone: J043029C11, full insert sequence NA coding protein psRNATarget
AK288412.1
ncRNA:24   AGGUAAAUUAUAAUAUUCAGCAAA   1
  ||=|||||||||||||||*|||||
targets:2308   UCUAUUUAAUAUUAUAAGCCGUUU   2331

1.5 Oryza sativa Japonica Group cDNA, clone: J090030N09, full insert sequence NA coding protein psRNATarget
XM_015756146.1
ncRNA:24   AGGUAAAUUAUAAUAUUCAGCAAA   1
  |||=|||*||||||||||||||||
targets:3515   UCCGUUUCAUAUUAUAAGUCGUUU   3538

1.0 PREDICTED: Oryza sativa Japonica Group type I inositol polyphosphate 5-phosphatase 2 (LOC4347930), transcript variant X4, mRNA type I inositol polyphosphate 5-phosphatase 2(LOC4347930) coding protein psRNATarget
XM_015756146.1
ncRNA:24   AGGUAAAUUAUAAUAUUCAGCAAA   1
  |||=|||*||||||||||||||*|
targets:3439   UCCGUUUCAUAUUAUAAGUCGUGU   3462

2.5 PREDICTED: Oryza sativa Japonica Group type I inositol polyphosphate 5-phosphatase 2 (LOC4347930), transcript variant X4, mRNA type I inositol polyphosphate 5-phosphatase 2(LOC4347930) coding protein psRNATarget
XM_015761225.1
ncRNA:24   AGGUAAAUUAUAAUAUUCAGCAAA   1
  |||||||*|||||||||||=||||
targets:2805   UCCAUUUUAUAUUAUAAGUUGUUU   2828

2.5 PREDICTED: Oryza sativa Japonica Group DELLA protein RHT-1-like (LOC107276343), mRNA DELLA protein RHT-1-like(LOC107276343) coding protein psRNATarget
AK064238.1
ncRNA:24   AGGUAAAUUAUAAUAUUCAGCAAA   1
  |||=|||*||||||||||||||||
targets:1111   UCCGUUUCAUAUUAUAAGUCGUUU   1134

1.0 Oryza sativa Japonica Group cDNA clone:002-105-A09, full insert sequence NA coding protein psRNATarget
XM_015789811.1
ncRNA:24   AGGUAAAUUAUAAUAUUCAGCAAA   1
  |||=|||*||||||||||||||||
targets:760   UCCGUUUUAUAUUAUAAGUCGUUU   783

1.0 PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4343998 (LOC4343998), transcript variant X1, mRNA uncharacterized LOC4343998(LOC4343998) coding protein psRNATarget
AK066375.1
ncRNA:24   AGGUAAAUUAUAAUAUUCAGCAAA   1
  ||=||||*|||||||||||=||||
targets:2663   UCUAUUUUAUAUUAUAAGUUGUUU   2686

2.5 Oryza sativa Japonica Group cDNA clone:J013064L19, full insert sequence NA coding protein psRNATarget
XM_015794737.1
ncRNA:24   AGGUAAAUUAUAAUAUUCAGCAAA   1
  |||=|||*||||||||=|||||||
targets:1488   UCCGUUUCAUAUUAUAGGUCGUUU   1511

2.5 PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4346071 (LOC4346071), mRNA uncharacterized LOC4346071(LOC4346071) coding protein psRNATarget
CT832780.1
ncRNA:24   AGGUAAAUUAUAAUAUUCAGCAAA   1
  ||=||||*|||||||||||=||||
targets:686   UCUAUUUUAUAUUAUAAGUUGUUU   709

2.5 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCEA001G24, full insert sequence NA coding protein psRNATarget
AK288934.1
ncRNA:24   AGGUAAAUUAUAAUAUUCAGCAAA   1
  |||||||*||||||||||||*|||
targets:1048   UCCAUUUCAUAUUAUAAGUCAUUU   1071

2.5 Oryza sativa Japonica Group cDNA, clone: J090082I21, full insert sequence NA coding protein psRNATarget
AK065519.1
ncRNA:24   AGGUAAAUUAUAAUAUUCAGCAAA   1
  |||||||*||||||||||||*|||
targets:981   UCCAUUUCAUAUUAUAAGUCAUUU   1004

2.5 Oryza sativa Japonica Group cDNA clone:J013029E19, full insert sequence NA coding protein psRNATarget
AK102033.1
ncRNA:24   AGGUAAAUUAUAAUAUUCAGCAAA   1
  ||==|||*|||||||||||=||||
targets:1112   UCUGUUUCAUAUUAUAAGUUGUUU   1135

2.5 Oryza sativa Japonica Group cDNA clone:J033081B10, full insert sequence NA coding protein psRNATarget
AK063297.1
ncRNA:24   AGGUAAAUUAUAAUAUUCAGCAAA   1
  ||==|||*|||||=||||||||||
targets:1477   UCUGUUUCAUAUUGUAAGUCGUUU   1500

2.5 Oryza sativa Japonica Group cDNA clone:001-113-E11, full insert sequence NA coding protein psRNATarget
AK288575.1
ncRNA:24   AGGUAAAUUAUAAUAUUCAGCAAA   1
  |||=|*|*||||||||||||||||
targets:2616   UCCGUCUCAUAUUAUAAGUCGUUU   2639

2.0 Oryza sativa Japonica Group cDNA, clone: J090049A09, full insert sequence NA coding protein psRNATarget
XM_015756148.1
ncRNA:24   AGGUAAAUUAUAAUAUUCAGCAAA   1
  |||=|||*||||||||||||||*|
targets:3439   UCCGUUUCAUAUUAUAAGUCGUGU   3462

2.5 PREDICTED: Oryza sativa Japonica Group type I inositol polyphosphate 5-phosphatase 2 (LOC4347930), transcript variant X5, mRNA type I inositol polyphosphate 5-phosphatase 2(LOC4347930) coding protein psRNATarget
XM_015795843.1
ncRNA:24   AGGUAAAUUAUAAUAUUCAGCAAA   1
  |||=|*|*||||||||||||||||
targets:2631   UCCGUCUCAUAUUAUAAGUCGUUU   2654

2.0 PREDICTED: Oryza sativa Japonica Group pentatricopeptide repeat-containing protein At5g56310 (LOC4347034), transcript variant X1, mRNA pentatricopeptide repeat-containing protein At5g56310(LOC4347034) coding protein psRNATarget
AK119265.1
ncRNA:24   AGGUAAAUUAUAAUAUUCAGCAAA   1
  |||=|||*||||||||||||*|||
targets:444   UCCGUUUCAUAUUAUAAGUCAUUU   467

2.5 Oryza sativa Japonica Group cDNA clone:001-130-A05, full insert sequence NA coding protein psRNATarget
XM_015762557.1
ncRNA:24   AGGUAAAUUAUAAUAUUCAGCAAA   1
  |||=|||*|||||||||*||||||
targets:1395   UCCGUUUCAUAUUAUAAUUCGUUU   1418

2.5 PREDICTED: Oryza sativa Japonica Group endothelin-converting enzyme 2 (LOC4350724), transcript variant X2, mRNA endothelin-converting enzyme 2(LOC4350724) coding protein psRNATarget
AK107593.1
ncRNA:24   AGGUAAAUUAUAAUAUUCAGCAAA   1
  |||=|||*|||||||||*||||||
targets:1055   UCCGUUUCAUAUUAUAAUUCGUUU   1078

2.5 Oryza sativa Japonica Group cDNA clone:002-131-A08, full insert sequence NA coding protein psRNATarget
XM_015762556.1
ncRNA:24   AGGUAAAUUAUAAUAUUCAGCAAA   1
  |||=|||*|||||||||*||||||
targets:1411   UCCGUUUCAUAUUAUAAUUCGUUU   1434

2.5 PREDICTED: Oryza sativa Japonica Group endothelin-converting enzyme 2 (LOC4350724), transcript variant X1, mRNA endothelin-converting enzyme 2(LOC4350724) coding protein psRNATarget
XM_015786539.1
ncRNA:24   AGGUAAAUUAUAAUAUUCAGCAAA   1
  |||=|||*|*||||||||||||||
targets:708   UCCGUUUUAGAUUAUAAGUCGUUU   731

2.0 PREDICTED: Oryza sativa Japonica Group basic blue protein-like (LOC107277353), mRNA basic blue protein-like(LOC107277353) coding protein psRNATarget
AK071694.1
ncRNA:24   AGGUAAAUUAUAAUAUUCAGCAAA   1
  |||=|||*|||||||||*||||||
targets:1108   UCCGUUUCAUAUUAUAAUUCGUUU   1131

2.5 Oryza sativa Japonica Group cDNA clone:J023108E23, full insert sequence NA coding protein psRNATarget
CT833782.1
ncRNA:24   AGGUAAAUUAUAAUAUUCAGCAAA   1
  |||=|||*|*||||||||||||||
targets:595   UCCGUUUUAGAUUAUAAGUCGUUU   618

2.0 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSN045G22, full insert sequence NA coding protein psRNATarget
AK071452.1
ncRNA:24   AGGUAAAUUAUAAUAUUCAGCAAA   1
  |=|=|||*|||||||||*||||||
targets:393   UUCGUUUCAUAUUAUAAAUCGUUU   416

2.5 Oryza sativa Japonica Group cDNA clone:J023091J01, full insert sequence NA coding protein psRNATarget
XM_015762094.1
ncRNA:24   AGGUAAAUUAUAAUAUUCAGCAAA   1
  |||*|||*||||||||||||*|||
targets:3526   UCCUUUUCAUAUUAUAAGUCAUUU   3549

2.5 PREDICTED: Oryza sativa Japonica Group disease resistance protein RPM1 (LOC4350251), transcript variant X1, mRNA disease resistance protein RPM1(LOC4350251) coding protein psRNATarget
XM_015762095.1
ncRNA:24   AGGUAAAUUAUAAUAUUCAGCAAA   1
  |||*|||*||||||||||||*|||
targets:3346   UCCUUUUCAUAUUAUAAGUCAUUU   3369

2.5 PREDICTED: Oryza sativa Japonica Group disease resistance protein RPM1 (LOC4350251), transcript variant X2, mRNA disease resistance protein RPM1(LOC4350251) coding protein psRNATarget
AK121009.1
ncRNA:24   AGGUAAAUUAUAAUAUUCAGCAAA   1
  *=|=|||*||||||||||||*|||
targets:1184   AUCGUUUCAUAUUAUAAGUCAUUU   1207

2.5 Oryza sativa Japonica Group cDNA clone:J023047B10, full insert sequence NA coding protein psRNATarget
XM_015785072.1
ncRNA:24   AGGUAAAU-UAUAAUAUUCAGCAAA   1
  *||*|||*-||||||||||||||||
targets:1844   ACCUUUUCCAUAUUAUAAGUCGUUU   1868

3.0 PREDICTED: Oryza sativa Japonica Group serine carboxypeptidase-like 33 (LOC4337873), transcript variant X1, mRNA serine carboxypeptidase-like 33(LOC4337873) coding protein psRNATarget
XM_015785073.1
ncRNA:24   AGGUAAAU-UAUAAUAUUCAGCAAA   1
  *||*|||*-||||||||||||||||
targets:1838   ACCUUUUCCAUAUUAUAAGUCGUUU   1862

3.0 PREDICTED: Oryza sativa Japonica Group serine carboxypeptidase-like 33 (LOC4337873), transcript variant X2, mRNA serine carboxypeptidase-like 33(LOC4337873) coding protein psRNATarget
AK063309.1
ncRNA:24   AGGUAAAUUAUAAUAUUCAGCAAA   1
  ||*=|||*||||||||||||*|||
targets:947   UCAGUUUCAUAUUAUAAGUCAUUU   970

2.5 Oryza sativa Japonica Group cDNA clone:001-113-G01, full insert sequence NA coding protein psRNATarget
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