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BaseInfo

ncRNA ID	novel_osa_miR2942
Species	Oryza sativa
Class	miRNA
Genome position	Chr1:19007190-19007291 [-]
Reference genome	IRGSP-1.0
Source	SRR2040383
Length	24
Mature sequence(if miRNA)	79 - AUUUUAGCAUUUUUCACAUUCAUA - 102
Stem-loop(if miRNA)	--       C                 A                   GAAU   AUUUUAG AUUUUUCACAUUCAUAU GAUGUUAAUGAAUCUAGAU    A   ||||||| ||||||||||||||||| |||||||||||||||||||   UAAGAUC UAAAGAGUGUAAGUAUA CUACAAUUACUUAGAUCUG    U AG       A                 A                   UAUA
Stem-loop sequence	AUUUUAGCAUUUUUCACAUUCAUAUAGAUGUUAAUGAAUCUAGAUGAAUAUAUAUGUCUAGAUUCAUUAACAUCAAUAUGAAUGUGAGAAAUACUAGAAUGA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
CT837577.1	ncRNA:24   AUACUUACACUUUUUACGAUUUUA   1   |||||||||||||||||||||||| targets:284   UAUGAAUGUGAAAAAUGCUAAAAU   307 Target Full Sequence	0.0	Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSN009E14, full insert sequence	NA	coding protein	psRNATarget
CT837528.1	ncRNA:24   AUACUUACACUUUUUACGAUUUUA   1   ||||||||||=||||||||||||| targets:908   UAUGAAUGUGGAAAAUGCUAAAAU   931 Target Full Sequence	1.0	Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSN037B21, full insert sequence	NA	coding protein	psRNATarget
XM_015778852.1	ncRNA:24   AUACUUACACUUUUUACGAUUUUA   1   ||||||||||=||||||||||||| targets:9   UAUGAAUGUGGAAAAUGCUAAAAU   32 Target Full Sequence	1.0	PREDICTED: Oryza sativa Japonica Group transcription factor FER-LIKE IRON DEFICIENCY-INDUCED TRANSCRIPTION FACTOR-like (LOC107276663), mRNA	transcription factor FER-LIKE IRON DEFICIENCY-INDUCED TRANSCRIPTION FACTOR-like(LOC107276663)	coding protein	psRNATarget
AK287994.1	ncRNA:24   AUACUUACACUUUUUACGAUUUUA   1   ||||||||||=||||||||||||| targets:1545   UAUGAAUGUGGAAAAUGCUAAAAU   1568 Target Full Sequence	1.0	Oryza sativa Japonica Group cDNA, clone: J075099E21, full insert sequence	NA	coding protein	psRNATarget
XM_015782137.1	ncRNA:24   AUACUUACACUUUUUACGAUUUUA   1   ||||||||||=||||||||||||| targets:1594   UAUGAAUGUGGAAAAUGCUAAAAU   1617 Target Full Sequence	1.0	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4339294 (LOC4339294), mRNA	uncharacterized LOC4339294(LOC4339294)	coding protein	psRNATarget
XM_015793141.1	ncRNA:24   AUACUUACACUUUUUACGAUUUUA   1   ||||||||||=||||||||||||| targets:2000   UAUGAAUGUGGAAAAUGCUAAAAU   2023 Target Full Sequence	1.0	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4344622 (LOC4344622), mRNA	uncharacterized LOC4344622(LOC4344622)	coding protein	psRNATarget
AK120060.1	ncRNA:24   AUACUUACACUUUUUACGAUUUUA   1   ||||||||||=||||||||||||| targets:2152   UAUGAAUGUGGAAAAUGCUAAAAU   2175 Target Full Sequence	1.0	Oryza sativa Japonica Group cDNA clone:J013001G01, full insert sequence	NA	coding protein	psRNATarget
XM_015778310.1	ncRNA:24   AUACUUACACUUUUUACGAUUUUA   1   ||||||||||||||||||||=||| targets:2195   UAUGAAUGUGAAAAAUGCUAGAAU   2218 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group gamma-glutamyltranspeptidase 1 (LOC4336033), mRNA	gamma-glutamyltranspeptidase 1(LOC4336033)	coding protein	psRNATarget
CT833491.1	ncRNA:24   AUACUUACACUUUUUACGAUUUUA   1   ||||||||||=|||||||||=||| targets:98   UAUGAAUGUGGAAAAUGCUAGAAU   121 Target Full Sequence	2.5	Oryza sativa (indica cultivar-group) cDNA clone:OSIGCFA011O12, full insert sequence	NA	coding protein	psRNATarget
XM_015783507.1	ncRNA:24   AUACUUACACUUUUUACGAUUUUA   1   ||||||||||==|||||||||||| targets:845   UAUGAAUGUGGGAAAUGCUAAAAU   868 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group ethylene-responsive transcription factor ERF014-like (LOC107277887), mRNA	ethylene-responsive transcription factor ERF014-like(LOC107277887)	coding protein	psRNATarget
CT837839.1	ncRNA:24   AUACUUACACUUUUUACGAUUUUA   1   ||||||||||=|||||||||=||| targets:1011   UAUGAAUGUGGAAAAUGCUAGAAU   1034 Target Full Sequence	2.5	Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA105C15, full insert sequence	NA	coding protein	psRNATarget
CT833662.1	ncRNA:24   AUACUUACACUUUUUACGAUUUUA   1   ||||||||||=|||||||||=||| targets:1094   UAUGAAUGUGGAAAAUGCUAGAAU   1117 Target Full Sequence	2.5	Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSN049L15, full insert sequence	NA	coding protein	psRNATarget
XM_015763560.1	ncRNA:24   AUACUUACACUUUUUACGAUUUUA   1   ||||||||||=|||||||||=||| targets:1064   UAUGAAUGUGGAAAAUGCUAGAAU   1087 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC107278415 (LOC107278415), mRNA	uncharacterized LOC107278415(LOC107278415)	coding protein	psRNATarget
CT837593.1	ncRNA:24   AUACUUACACUUUUUACGAUUUUA   1   ||||||||||=|||||||||=||| targets:171   UAUGAAUGUGGAAAAUGCUAGAAU   194 Target Full Sequence	2.5	Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA122C23, full insert sequence	NA	coding protein	psRNATarget
XM_015768090.1	ncRNA:24   AUACUUACACUUUUUACGAUUUUA   1   ||||||||||=|||||||||=||| targets:1293   UAUGAAUGUGGAAAAUGCUAGAAU   1316 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group mediator-associated protein 2 (LOC4326241), transcript variant X2, mRNA	mediator-associated protein 2(LOC4326241)	coding protein	psRNATarget
XM_015768116.1	ncRNA:24   AUACUUACACUUUUUACGAUUUUA   1   ||||||||||=|||||||||=||| targets:1402   UAUGAAUGUGGAAAAUGCUAGAAU   1425 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group mediator-associated protein 2 (LOC4326241), transcript variant X5, mRNA	mediator-associated protein 2(LOC4326241)	coding protein	psRNATarget
AK071679.1	ncRNA:24   AUACUUACACUUUUUACGAUUUUA   1   ||||||||||=|||||||||=||| targets:1867   UAUGAAUGUGGAAAAUGCUAGAAU   1890 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:J023108I08, full insert sequence	NA	coding protein	psRNATarget
XM_015777143.1	ncRNA:24   AUACUUACACUUUUUACGAUUUUA   1   ||||||||||=|||||||||=||| targets:1983   UAUGAAUGUGGAAAAUGCUAGAAU   2006 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group lecithin-cholesterol acyltransferase-like 1 (LOC4333995), mRNA	lecithin-cholesterol acyltransferase-like 1(LOC4333995)	coding protein	psRNATarget
XM_015768099.1	ncRNA:24   AUACUUACACUUUUUACGAUUUUA   1   ||||||||||=|||||||||=||| targets:2589   UAUGAAUGUGGAAAAUGCUAGAAU   2612 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group mediator-associated protein 2 (LOC4326241), transcript variant X3, mRNA	mediator-associated protein 2(LOC4326241)	coding protein	psRNATarget
XM_015768108.1	ncRNA:24   AUACUUACACUUUUUACGAUUUUA   1   ||||||||||=|||||||||=||| targets:2746   UAUGAAUGUGGAAAAUGCUAGAAU   2769 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group mediator-associated protein 2 (LOC4326241), transcript variant X4, mRNA	mediator-associated protein 2(LOC4326241)	coding protein	psRNATarget
XM_015767758.1	ncRNA:24   AUACUUACACUUUUUACGAUUUUA   1   ||||||||||==|||||||||||| targets:3831   UAUGAAUGUGGGAAAUGCUAAAAU   3854 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group transcription factor bHLH68 (LOC4325885), transcript variant X3, mRNA	transcription factor bHLH68(LOC4325885)	coding protein	psRNATarget
XM_015761673.1	ncRNA:24   AUACUUACACUUUUUACGAUUUUA   1   |||||||*||||||||||||=||| targets:5710   UAUGAAUAUGAAAAAUGCUAGAAU   5733 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group regulatory-associated protein of TOR 2 (LOC9266997), transcript variant X2, mRNA	regulatory-associated protein of TOR 2(LOC9266997)	coding protein	psRNATarget
XM_015761672.1	ncRNA:24   AUACUUACACUUUUUACGAUUUUA   1   |||||||*||||||||||||=||| targets:5714   UAUGAAUAUGAAAAAUGCUAGAAU   5737 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group regulatory-associated protein of TOR 2 (LOC9266997), transcript variant X1, mRNA	regulatory-associated protein of TOR 2(LOC9266997)	coding protein	psRNATarget
CT835025.1	ncRNA:24   AUACUUACACUUUUUACGAUUUUA   1   ||||||*|||=||||||||||||| targets:274   UAUGAACGUGGAAAAUGCUAAAAU   297 Target Full Sequence	2.0	Oryza sativa (indica cultivar-group) cDNA clone:OSIGCPI029L19, full insert sequence	NA	coding protein	psRNATarget
AK071746.1	ncRNA:24   AUACUUACACUUUUUACGAUUUUA   1   |||*||||||=||||||||||||| targets:909   UAUAAAUGUGGAAAAUGCUAAAAU   932 Target Full Sequence	1.0	Oryza sativa Japonica Group cDNA clone:J023111G24, full insert sequence	NA	coding protein	psRNATarget
XM_015783671.1	ncRNA:24   AUACUUACACUUUUUACGAUUUUA   1   ||||||*|||||||||||||=||| targets:1064   UAUGAACGUGAAAAAUGCUAGAAU   1087 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4339170 (LOC4339170), mRNA	uncharacterized LOC4339170(LOC4339170)	coding protein	psRNATarget
XM_015786593.1	ncRNA:24   AUACUUACACUUUUUACGAUUUUA   1   |||*||||||=||||||||||||| targets:1007   UAUAAAUGUGGAAAAUGCUAAAAU   1030 Target Full Sequence	1.0	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4340983 (LOC4340983), mRNA	uncharacterized LOC4340983(LOC4340983)	coding protein	psRNATarget
AK066216.1	ncRNA:24   AUACUUACACUUUUUACGAUUUUA   1   |||||||*||||||||||||=||| targets:1113   UAUGAAUAUGAAAAAUGCUAGAAU   1136 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:J013052J02, full insert sequence	NA	coding protein	psRNATarget
CT832810.1	ncRNA:24   AUACUUACACUUUUUACGAUUUUA   1   |||||||*||||||||||||=||| targets:1112   UAUGAAUAUGAAAAAUGCUAGAAU   1135 Target Full Sequence	2.5	Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA121K07, full insert sequence	NA	coding protein	psRNATarget
XM_015777391.1	ncRNA:24   AUACUUACACUUUUUACGAUUUUA   1   |||||||*||||||||||||=||| targets:1365   UAUGAAUAUGAAAAAUGCUAGAAU   1388 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4333864 (LOC4333864), mRNA	uncharacterized LOC4333864(LOC4333864)	coding protein	psRNATarget
AK099623.1	ncRNA:24   AUACUUACACUUUUUACGAUUUUA   1   |||||||*||||||||||||=||| targets:165   UAUGAAUAUGAAAAAUGCUAGAAU   188 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:J013053G12, full insert sequence	NA	coding protein	psRNATarget
AK109758.1	ncRNA:24   AUACUUACACUUUUUACGAUUUUA   1   |||||||*||||||||||||=||| targets:1724   UAUGAAUAUGAAAAAUGCUAGAAU   1747 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:002-146-G06, full insert sequence	NA	coding protein	psRNATarget
AK121342.1	ncRNA:24   AUACUUACACUUUUUACGAUUUUA   1   |||*||||||=||||||||||||| targets:4670   UAUAAAUGUGGAAAAUGCUAAAAU   4693 Target Full Sequence	1.0	Oryza sativa Japonica Group cDNA clone:J023121A11, full insert sequence	NA	coding protein	psRNATarget
XM_015789040.1	ncRNA:24   AUACUUACACUUUUUACGAUUUUA   1   |||*||||||=||||||||||||| targets:4836   UAUAAAUGUGGAAAAUGCUAAAAU   4859 Target Full Sequence	1.0	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC9266525 (LOC9266525), transcript variant X1, mRNA	uncharacterized LOC9266525(LOC9266525)	coding protein	psRNATarget
CT837490.1	ncRNA:24   AUACUUACACUUUUUACGAUUUUA   1   |||*||||||==|||||||||||| targets:917   UAUAAAUGUGGGAAAUGCUAAAAU   940 Target Full Sequence	2.5	Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA109F07, full insert sequence	NA	coding protein	psRNATarget
AK069916.1	ncRNA:24   AUACUUACACUUUUUACGAUUUUA   1   ||*|||||||=|||||||||=||| targets:1958   UACGAAUGUGGAAAAUGCUAGAAU   1981 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:J023038C16, full insert sequence	NA	coding protein	psRNATarget
XM_015763894.1	ncRNA:24   AUACUUACACUUUUUACGAUUUUA   1   ||*|||||||=|||||||||=||| targets:1972   UACGAAUGUGGAAAAUGCUAGAAU   1995 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group ureide permease 2 (LOC4352286), mRNA	ureide permease 2(LOC4352286)	coding protein	psRNATarget
XM_015758389.1	ncRNA:24   AUACUUACACUUUUUACGAUUUUA   1   |||*||||||=|||||||||=||| targets:2206   UAUAAAUGUGGAAAAUGCUAGAAU   2229 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group protein NRT1/ PTR FAMILY 8.3-like (LOC107276819), mRNA	protein NRT1/ PTR FAMILY 8.3-like(LOC107276819)	coding protein	psRNATarget
AK070012.1	ncRNA:24   AUACUUACACUUUUUACGAUUUUA   1   |||*||||||=|||||||||=||| targets:2409   UAUAAAUGUGGAAAAUGCUAGAAU   2432 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:J023037B16, full insert sequence	NA	coding protein	psRNATarget
XM_015780917.1	ncRNA:24   AUACUUACACUUUUUACGAUUUUA   1   |||*||||||==|||||||||||| targets:4760   UAUAAAUGUGGGAAAUGCUAAAAU   4783 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group DExH-box ATP-dependent RNA helicase DExH7, chloroplastic (LOC9267691), transcript variant X2, mRNA	DExH-box ATP-dependent RNA helicase DExH7, chloroplastic(LOC9267691)	coding protein	psRNATarget
XM_015780918.1	ncRNA:24   AUACUUACACUUUUUACGAUUUUA   1   |||*||||||==|||||||||||| targets:4809   UAUAAAUGUGGGAAAUGCUAAAAU   4832 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group DExH-box ATP-dependent RNA helicase DExH7, chloroplastic (LOC9267691), transcript variant X3, mRNA	DExH-box ATP-dependent RNA helicase DExH7, chloroplastic(LOC9267691)	coding protein	psRNATarget
XM_015780916.1	ncRNA:24   AUACUUACACUUUUUACGAUUUUA   1   |||*||||||==|||||||||||| targets:4818   UAUAAAUGUGGGAAAUGCUAAAAU   4841 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group DExH-box ATP-dependent RNA helicase DExH7, chloroplastic (LOC9267691), transcript variant X1, mRNA	DExH-box ATP-dependent RNA helicase DExH7, chloroplastic(LOC9267691)	coding protein	psRNATarget
XM_015763581.1	ncRNA:24   AUACUUACACUUUUUACGAUUUUA   1   ||||||*|||||||||||||*||| targets:1757   UAUGAACGUGAAAAAUGCUACAAU   1780 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group benzyl alcohol O-benzoyltransferase-like (LOC107276754), mRNA	benzyl alcohol O-benzoyltransferase-like(LOC107276754)	coding protein	psRNATarget
AK242586.1	ncRNA:24   AUACUUACACUUUUUACGAUUUUA   1   *||*||||||=|||||||||=||| targets:571   AAUAAAUGUGGAAAAUGCUAGAAU   594 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J090010P05, full insert sequence	NA	coding protein	psRNATarget
XM_015794898.1	ncRNA:24   AUACUUACACUUUUUACGAUUUUA   1   *||*||||||=|||||||||=||| targets:582   AAUAAAUGUGGAAAAUGCUAGAAU   605 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group putative EG45-like domain containing protein 1 (LOC9267730), mRNA	putative EG45-like domain containing protein 1(LOC9267730)	coding protein	psRNATarget
CT835159.1	ncRNA:24   AUACUUACACUUUUUACGAUUUUA   1   |||*|||*||||||||||||=||| targets:286   UAUAAAUAUGAAAAAUGCUAGAAU   309 Target Full Sequence	2.5	Oryza sativa (indica cultivar-group) cDNA clone:OSIGCPI015J24, full insert sequence	NA	coding protein	psRNATarget
AK240884.1	ncRNA:24   AUACUUACACUUUUUACGAUUUUA   1   |||*|||||*||||||||||=||| targets:498   UAUAAAUGUAAAAAAUGCUAGAAU   521 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J065028F04, full insert sequence	NA	coding protein	psRNATarget
AK240780.1	ncRNA:24   AUACUUACACUUUUUACGAUUUUA   1   |||||||**|=||||||||||||| targets:981   UAUGAAUACGGAAAAUGCUAAAAU   1004 Target Full Sequence	3.0	Oryza sativa Japonica Group cDNA, clone: J053075H13, full insert sequence	NA	coding protein	psRNATarget
CT834553.1	ncRNA:24   AUACUUACACUUUUUACGAUUUUA   1   |||--|||||==|||||||||||| targets:935   UAU--AUGUGGGAAAUGCUAAAAU   956 Target Full Sequence	2.5	Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSA018G24, full insert sequence	NA	coding protein	psRNATarget
AK069119.1	ncRNA:24   AUACUUACACUUUUUACGAUUUUA   1   |||--|||||==|||||||||||| targets:1031   UAU--AUGUGGGAAAUGCUAAAAU   1052 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:J023003A19, full insert sequence	NA	coding protein	psRNATarget
CT832752.1	ncRNA:24   AUACUUACACUUUUUACGAUUUUA   1   |||--|||||==|||||||||||| targets:999   UAU--AUGUGGGAAAUGCUAAAAU   1020 Target Full Sequence	2.5	Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSN011H19, full insert sequence	NA	coding protein	psRNATarget
XM_015774602.1	ncRNA:24   AUACUUACACUUUUUACGAUUUUA   1   |||--|||||==|||||||||||| targets:1062   UAU--AUGUGGGAAAUGCUAAAAU   1083 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group protein app1 (LOC4334321), mRNA	protein app1(LOC4334321)	coding protein	psRNATarget
CT835090.1	ncRNA:24   AUACUUACACUUUUUACGAUUUUA   1   *|*||=||||||||||||*||||| targets:302   AAAGAGUGUGAAAAAUGCAAAAAU   325 Target Full Sequence	2.5	Oryza sativa (indica cultivar-group) cDNA clone:OSIGCEA009O18, full insert sequence	NA	coding protein	psRNATarget
XM_015777685.1	ncRNA:24   AUACUUACACUUUUUACGAUUUUA   1   *|*||=||||||||||||*||||| targets:338   AAAGAGUGUGAAAAAUGCAAAAAU   361 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group DNA-directed RNA polymerase I subunit RPA12 (LOC4333888), mRNA	DNA-directed RNA polymerase I subunit RPA12(LOC4333888)	coding protein	psRNATarget