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BaseInfo

ncRNA ID	novel_osa_miR2941
Species	Oryza sativa
Class	miRNA
Genome position	Chr10:8825701-8825863 [-]
Reference genome	IRGSP-1.0
Source	SRR2040383;SRR2040405
Length	24
Mature sequence(if miRNA)	140 - AAUUGCUUCAAGUUUGACUAAGUU - 163
Stem-loop(if miRNA)	--                              C   UAU   U      A  UUA    AU   U       AAUU    AUU   AAUUGCUUCAAGUUUGACUAAGUUUAUAGA AAA   AGU AUAUUU CA   CUAA  UAG UUUAUUA    AAUA   A   |||||||||||||||||||||||||||||| |||   ||| |||||| ||   ||||  ||| |||||||    ||||   UUGACGAAGUUCAAACUGGUUCAAAUAUCU UUU   UCA UAUAAA GU   GGUU  AUU AAAUAAU    UUAU   A GU                              U   -UU   U      A  -UG    CU   U       -CUU    AUA
Stem-loop sequence	AAUUGCUUCAAGUUUGACUAAGUUUAUAGACAAAUAUAGUUAUAUUUACAUUACUAAAUUAGUUUUAUUAAAUUAAUAAUUAAAUAUAUUUUCUAAUAAAUUUAUCUUGGGUUGAAAAUAUUACUUUUUUUUCUAUAAACUUGGUCAAACUUGAAGCAGUUUG

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
CT833794.1	ncRNA:24   UUGAAUCAGUUUGAACUUCGUUAA   1   ||||||||=||||||||||||=|| targets:612   AACUUAGUUAAACUUGAAGCAGUU   635 Target Full Sequence	2.5	Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSA042F13, full insert sequence	NA	coding protein	psRNATarget
XM_015778310.1	ncRNA:24   UUGAAUCAGUUUGAACUUCGUUAA   1   |||||=|||||||||||||||=|| targets:2275   AACUUGGUCAAACUUGAAGCAGUU   2298 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group gamma-glutamyltranspeptidase 1 (LOC4336033), mRNA	gamma-glutamyltranspeptidase 1(LOC4336033)	coding protein	psRNATarget
CT837874.1	ncRNA:24   UUGAAUCAGUUUGAACUUCGUUAA   1   ||||||*||||||||||||||=|| targets:297   AACUUAAUCAAACUUGAAGCAGUU   320 Target Full Sequence	2.5	Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSN062A18, full insert sequence	NA	coding protein	psRNATarget
XM_015756529.1	ncRNA:24   UUGAAUCAGUUUGAACUUCGUUAA   1   ||||||*||||||||||||||=|| targets:993   AACUUAAUCAAACUUGAAGCAGUU   1016 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group putative disease resistance protein RGA3 (LOC9271983), mRNA	putative disease resistance protein RGA3(LOC9271983)	coding protein	psRNATarget
AK066719.1	ncRNA:24   UU-GAAUCAGUUUGAACUUCGUUAA   1   ||-||||||=||||||||||||=|| targets:808   AAUCUUAGUUAAACUUGAAGCAGUU   832 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:J013082K18, full insert sequence	NA	coding protein	psRNATarget