| ncRNA ID | ath-miR852 |
| Species | Arabidopsis thaliana |
| Class | miRNA |
| Genome position | chr4:8336166-8336373 [+] |
| Reference genome | TAIR10 |
| Source | miRBase |
| Length | 21 |
| Mature sequence(if miRNA) | 137 - AAGAUAAGCGCCUUAGUUCUG - 157 |
| Stem-loop(if miRNA) |
UUUAU ACAUCCUAUUAA UAUGCUGAAACAAAGCUCAAAGCUCAGAGCUAAGGCGCUUAUCUUCUUUGAUAUUGCAUGGAGUAUGCUUCUACUUCUCUAGGA CCUAA GUUUU G ||||| ||||| GGAUU GUUUC A ----U ------------ UUAUGUUGGAAUACGUAAAACACUUAUUCCGCGAAUAGAAGUCUUGAUUCCGCGAAUAGAAGAAACUAUAAAGGUAUUUUGCGU |
| Stem-loop sequence | UUUAUCCUAAACAUCCUAUUAAGUUUUUAUGCUGAAACAAAGCUCAAAGCUCAGAGCUAAGGCGCUUAUCUUCUUUGAUAUUGCAUGGAGUAUGCUUCUACUUCUCUAGGAGAUGCGUUUUAUGGAAAUAUCAAAGAAGAUAAGCGCCUUAGUUCUGAAGAUAAGCGCCUUAUUCACAAAAUGCAUAAGGUUGUAUUCUUUGUUAGGU |
| Target Acc | Alignment | Exception | Target Description | Target Gene Name | Target Type | Method | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| BT010748.1 |
|
3.0 | Arabidopsis thaliana At5g62670/MRG21_9 gene, complete cds | NA | coding protein | psRNATarget | |||||||||
| AY125493.1 |
|
3.0 | Arabidopsis thaliana AT5g62670/MRG21_9 mRNA, complete cds | NA | coding protein | psRNATarget | |||||||||
| NM_125662.4 |
|
3.0 | Arabidopsis thaliana H[+]-ATPase 11 (HA11), mRNA | H[+]-ATPase 11(HA11) | coding protein | psRNATarget |
| 1 | PMID:17182867
"A diverse and evolutionarily fluid set of microRNAs in Arabidopsis thaliana"; Rajagopalan R, Vaucheret H, Trejo J, Bartel DP; Genes Dev. 20:3407-3425(2006). |
| 2 | PMID:17299599
"High-throughput sequencing of Arabidopsis microRNAs: evidence for frequent birth and death of MIRNA genes"; Fahlgren N, Howell MD, Kasschau KD, Chapman EJ, Sullivan CM, Cumbie JS, Givan SA, Law TF, Grant SR, Dangl JL, Carrington JC; PLoS One. 2:e219(2007). |
| 3 | PMID:19815687
"Hypoxia-responsive microRNAs and trans-acting small interfering RNAs in Arabidopsis"; Moldovan D, Spriggs A, Yang J, Pogson BJ, Dennis ES, Wilson IW; J Exp Bot. 61:165-177(2010). |