Search result

BaseInfo

ncRNA ID	novel_osa_miR2934
Species	Oryza sativa
Class	miRNA
Genome position	Chr6:27911087-27911165 [-]
Reference genome	IRGSP-1.0
Source	SRR1555747;SRR1555749;SRR1555751;SRR1556016;SRR1556018;SRR1556020;SRR1654490;SRR1654491
Length	24
Mature sequence(if miRNA)	1 - AAUUUUUAGUUGGUGUACAUGGUG - 24
Stem-loop(if miRNA)	-UAG     A     -        --A    UAU      U     AUGUA UACUA UUGAAAGU   CAUG   GAAUUU C     ||||| ||||| ||||||||   ||||   |||||| C     UACAU GUGGU GAUUUUUA   GUGU   UUUAAG U GUGG     -     U        AUA    -UU      A
Stem-loop sequence	UAGAUGUAAUACUAUUGAAAGUACAUGUAUGAAUUUUCCUAGAAUUUUUUGUGAUAAUUUUUAGUUGGUGUACAUGGUG

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
AK288868.1	ncRNA:24   GUGGUACAUGUGGUUGAUUUUUAA   1   |||||||||||||||||||||||| targets:4179   CACCAUGUACACCAACUAAAAAUU   4202 Target Full Sequence	0.0	Oryza sativa Japonica Group cDNA, clone: J090078E01, full insert sequence	NA	coding protein	psRNATarget
CT828650.1	ncRNA:24   GUGGUACAUGUGGUUGAUUUUUAA   1   ||||=||||||||||||||||||| targets:474   CACCGUGUACACCAACUAAAAAUU   497 Target Full Sequence	0.0	Oryza sativa (indica cultivar-group) cDNA clone:OSIGCPI006N06, full insert sequence	NA	coding protein	psRNATarget
AK070664.1	ncRNA:24   GUG-GUACAUGUGGUUGAUUUUUAA   1   |||-|=||*||||||||||||||*| targets:492   CACACGUGCACACCAACUAAAAAAU   516 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:J023056O15, full insert sequence	NA	coding protein	psRNATarget