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BaseInfo

ncRNA ID novel_osa_miR2933
Species Oryza sativa
Class miRNA
Genome position Chr12:13601486-13601564 [-]
Reference genome IRGSP-1.0
Source SRR2040383;SRR2040409;SRR2040411;SRR2857728;SRR3123646;SRR1738228
Length 24
Mature sequence(if miRNA) 1 - AAAUAUGGGAAAUGCUAGAAUGAC - 24
Stem-loop(if miRNA) --                 C         G   --   AU
  CAUUUUAGCAUUUCCCA AUUUAUAUU AUA  CUA  G
  ||||||||||||||||| ||||||||| |||  |||  A
  GUAAGAUCGUAAAGGGU UAAAUAUAA UAU  GAU  A
CA                 A         A   UA   CU
Stem-loop sequence CAUUUUAGCAUUUCCCACAUUUAUAUUGAUACUAAUGAAUCUAGAUUAUAAAUAUAAAUAUGGGAAAUGCUAGAAUGAC

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_015756761.1
ncRNA:24   CAGUAAGAUCGUAAAGGGUAUAAA   1
  |||||||||||||||=||||||||
targets:3352   GUCAUUCUAGCAUUUUCCAUAUUU   3375

1.5 PREDICTED: Oryza sativa Japonica Group G-type lectin S-receptor-like serine/threonine-protein kinase At5g35370 (LOC4347249), mRNA G-type lectin S-receptor-like serine/threonine-protein kinase At5g35370(LOC4347249) coding protein psRNATarget
AK288502.1
ncRNA:24   CAGUAAGAUCGUAAAGGGUAUAAA   1
  ||||||||||||||||=|||||||
targets:565   GUCAUUCUAGCAUUUCUCAUAUUU   588

1.5 Oryza sativa Japonica Group cDNA, clone: J090041D12, full insert sequence NA coding protein psRNATarget
XM_015767720.1
ncRNA:24   CAGUAAGAUCGUAAAGGGUAUAAA   1
  ||||||||||||||||=|||||||
targets:566   GUCAUUCUAGCAUUUCUCAUAUUU   589

1.5 PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4330679 (LOC4330679), mRNA uncharacterized LOC4330679(LOC4330679) coding protein psRNATarget
AK070550.1
ncRNA:24   CAGUAAGAUCGUAAAGGGUAUAAA   1
  |||||||||||||||||||||||*
targets:2617   GUCAUUCUAGCAUUUCCCAUAUUC   2640

1.0 Oryza sativa Japonica Group cDNA clone:J023061C04, full insert sequence NA coding protein psRNATarget
AK099623.1
ncRNA:24   CAGUAAGAUCGUAAAGGGUAUAAA   1
  |||||||||||||||||||||||*
targets:86   GUCAUUCUAGCAUUUCCCAUAUUC   109

1.0 Oryza sativa Japonica Group cDNA clone:J013053G12, full insert sequence NA coding protein psRNATarget
AK100834.1
ncRNA:24   CAGUAAGAUCGUAAAGGGUAUAAA   1
  ||||||=|||=|||||||||||||
targets:1544   GUCAUUUUAGUAUUUCCCAUAUUU   1567

2.0 Oryza sativa Japonica Group cDNA clone:J023123D17, full insert sequence NA coding protein psRNATarget
XM_015779859.1
ncRNA:24   CAGUAAGAUCGUAAAGGGUAUAAA   1
  ||||||=||||||||=||||||||
targets:927   GUCAUUUUAGCAUUUUCCAUAUUU   950

2.5 PREDICTED: Oryza sativa Japonica Group formin-like protein 3 (LOC4335722), mRNA formin-like protein 3(LOC4335722) coding protein psRNATarget
AK102955.1
ncRNA:24   CAGUAAGAUCGUAAAGGGUAUAAA   1
  |||||||||||||||||||*||||
targets:770   GUCAUUCUAGCAUUUCCCACAUUU   793

1.5 Oryza sativa Japonica Group cDNA clone:J033115G04, full insert sequence NA coding protein psRNATarget
AK120060.1
ncRNA:24   CAGUAAGAUCGUAAAGGGUAUAAA   1
  |||||||||||||||||||*||||
targets:2073   GUCAUUCUAGCAUUUCCCAGAUUU   2096

1.5 Oryza sativa Japonica Group cDNA clone:J013001G01, full insert sequence NA coding protein psRNATarget
XM_015793141.1
ncRNA:24   CAGUAAGAUCGUAAAGGGUAUAAA   1
  |||||||||||||||||||*||||
targets:1921   GUCAUUCUAGCAUUUCCCAGAUUU   1944

1.5 PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4344622 (LOC4344622), mRNA uncharacterized LOC4344622(LOC4344622) coding protein psRNATarget
XM_015788194.1
ncRNA:24   CAGUAAGAUCGUAAAGGGUAUAAA   1
  |||||||||*|||||||=||||||
targets:1759   GUCAUUCUACCAUUUCCUAUAUUU   1782

2.5 PREDICTED: Oryza sativa Japonica Group embryonic stem cell-specific 5-hydroxymethylcytosine-binding protein (LOC4341015), transcript variant X1, mRNA embryonic stem cell-specific 5-hydroxymethylcytosine-binding protein(LOC4341015) coding protein psRNATarget
XM_015788196.1
ncRNA:24   CAGUAAGAUCGUAAAGGGUAUAAA   1
  |||||||||*|||||||=||||||
targets:1740   GUCAUUCUACCAUUUCCUAUAUUU   1763

2.5 PREDICTED: Oryza sativa Japonica Group embryonic stem cell-specific 5-hydroxymethylcytosine-binding protein (LOC4341015), transcript variant X3, mRNA embryonic stem cell-specific 5-hydroxymethylcytosine-binding protein(LOC4341015) coding protein psRNATarget
XM_015788195.1
ncRNA:24   CAGUAAGAUCGUAAAGGGUAUAAA   1
  |||||||||*|||||||=||||||
targets:1729   GUCAUUCUACCAUUUCCUAUAUUU   1752

2.5 PREDICTED: Oryza sativa Japonica Group embryonic stem cell-specific 5-hydroxymethylcytosine-binding protein (LOC4341015), transcript variant X2, mRNA embryonic stem cell-specific 5-hydroxymethylcytosine-binding protein(LOC4341015) coding protein psRNATarget
AK105572.1
ncRNA:24   CAGUAAGAUCGUAAAGGGUAUAAA   1
  |*||||=|||||||||||||||||
targets:575   GCCAUUUUAGCAUUUCCCAUAUUU   598

1.0 Oryza sativa Japonica Group cDNA clone:001-128-D03, full insert sequence NA coding protein psRNATarget
AK288229.1
ncRNA:24   CAGUAAGAUCGUAAAGGGUAUAAA   1
  |||||||||||||||||||*|||*
targets:3666   GUCAUUCUAGCAUUUCCCACAUUC   3689

2.5 Oryza sativa Japonica Group cDNA, clone: J090012M05, full insert sequence NA coding protein psRNATarget
XM_015780916.1
ncRNA:24   CAGUAAGAUCGUAAAGGGUAUAAA   1
  |||||||||||||||||||*|||*
targets:4739   GUCAUUCUAGCAUUUCCCACAUUC   4762

2.5 PREDICTED: Oryza sativa Japonica Group DExH-box ATP-dependent RNA helicase DExH7, chloroplastic (LOC9267691), transcript variant X1, mRNA DExH-box ATP-dependent RNA helicase DExH7, chloroplastic(LOC9267691) coding protein psRNATarget
XM_015780918.1
ncRNA:24   CAGUAAGAUCGUAAAGGGUAUAAA   1
  |||||||||||||||||||*|||*
targets:4730   GUCAUUCUAGCAUUUCCCACAUUC   4753

2.5 PREDICTED: Oryza sativa Japonica Group DExH-box ATP-dependent RNA helicase DExH7, chloroplastic (LOC9267691), transcript variant X3, mRNA DExH-box ATP-dependent RNA helicase DExH7, chloroplastic(LOC9267691) coding protein psRNATarget
XM_015780917.1
ncRNA:24   CAGUAAGAUCGUAAAGGGUAUAAA   1
  |||||||||||||||||||*|||*
targets:4681   GUCAUUCUAGCAUUUCCCACAUUC   4704

2.5 PREDICTED: Oryza sativa Japonica Group DExH-box ATP-dependent RNA helicase DExH7, chloroplastic (LOC9267691), transcript variant X2, mRNA DExH-box ATP-dependent RNA helicase DExH7, chloroplastic(LOC9267691) coding protein psRNATarget
XM_015783728.1
ncRNA:24   CAGUAAGAUCGUAAAGGGUAUAAA   1
  |||||||||||||||||||*|||*
targets:2801   GUCAUUCUAGCAUUUCCCACAUUC   2824

2.5 PREDICTED: Oryza sativa Japonica Group uncharacterized LOC9271594 (LOC9271594), transcript variant X1, mRNA uncharacterized LOC9271594(LOC9271594) coding protein psRNATarget
XM_015781780.1
ncRNA:24   CAGUAAGAUCGUAAAGGGUAUAAA   1
  |||||||||||||||||||*|||*
targets:3146   GUCAUUCUAGCAUUUCCCACAUUC   3169

2.5 PREDICTED: Oryza sativa Japonica Group protein ASPARTIC PROTEASE IN GUARD CELL 2 (LOC4337402), mRNA protein ASPARTIC PROTEASE IN GUARD CELL 2(LOC4337402) coding protein psRNATarget
XM_015760919.1
ncRNA:24   CAGUAAGAUCGUAAAGGGUAUAAA   1
  |||||||||||||||||||*|||*
targets:17   GUCAUUCUAGCAUUUCCCACAUUC   40

2.5 PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4350122 (LOC4350122), mRNA uncharacterized LOC4350122(LOC4350122) coding protein psRNATarget
XM_015779937.1
ncRNA:24   CAGUAAGAUCGUAAAGGGUAUAAA   1
  |||||||||||||||||||*|||*
targets:981   GUCAUUCUAGCAUUUCCCACAUUC   1004

2.5 PREDICTED: Oryza sativa Japonica Group small nuclear ribonucleoprotein Sm D1 (LOC4336118), transcript variant X1, mRNA small nuclear ribonucleoprotein Sm D1(LOC4336118) coding protein psRNATarget
XM_015779938.1
ncRNA:24   CAGUAAGAUCGUAAAGGGUAUAAA   1
  |||||||||||||||||||*|||*
targets:889   GUCAUUCUAGCAUUUCCCACAUUC   912

2.5 PREDICTED: Oryza sativa Japonica Group small nuclear ribonucleoprotein Sm D1 (LOC4336118), transcript variant X2, mRNA small nuclear ribonucleoprotein Sm D1(LOC4336118) coding protein psRNATarget
AK099655.1
ncRNA:24   CAGUAAGAUCGUAAAGGGUAUAAA   1
  |||||||||||||||||||*|||*
targets:696   GUCAUUCUAGCAUUUCCCACAUUC   719

2.5 Oryza sativa Japonica Group cDNA clone:J013066C07, full insert sequence NA coding protein psRNATarget
XM_015760082.1
ncRNA:24   CAGUAAGAUCGUAAAGGGUAUAAA   1
  |||||||||||||||||||*|||*
targets:1496   GUCAUUCUAGCAUUUCCCACAUUC   1519

2.5 PREDICTED: Oryza sativa Japonica Group putative protease Do-like 14 (LOC4350193), mRNA putative protease Do-like 14(LOC4350193) coding protein psRNATarget
AK106586.1
ncRNA:24   CAGUAAGAUCGUAAAGGGUAUAAA   1
  |||||||||||||||||||*|||*
targets:615   GUCAUUCUAGCAUUUCCCACAUUC   638

2.5 Oryza sativa Japonica Group cDNA clone:002-111-E12, full insert sequence NA coding protein psRNATarget
XM_015782137.1
ncRNA:24   CAGUAAGAUCGUAAAGGGUAUAAA   1
  |||||||||||||||||||*|||*
targets:1515   GUCAUUCUAGCAUUUCCCACAUUC   1538

2.5 PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4339294 (LOC4339294), mRNA uncharacterized LOC4339294(LOC4339294) coding protein psRNATarget
AK287994.1
ncRNA:24   CAGUAAGAUCGUAAAGGGUAUAAA   1
  |||||||||||||||||||*|||*
targets:1466   GUCAUUCUAGCAUUUCCCACAUUC   1489

2.5 Oryza sativa Japonica Group cDNA, clone: J075099E21, full insert sequence NA coding protein psRNATarget
CT837490.1
ncRNA:24   CAGUAAGAUCGUAAAGGGUAUAAA   1
  |||||||||||||||||||*|||*
targets:838   GUCAUUCUAGCAUUUCCCACAUUC   861

2.5 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA109F07, full insert sequence NA coding protein psRNATarget
XM_015783671.1
ncRNA:24   CAGUAAGAUCGUAAAGGGUAUAAA   1
  |||||||||||||||||||*|||*
targets:985   GUCAUUCUAGCAUUUCCCACAUUC   1008

2.5 PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4339170 (LOC4339170), mRNA uncharacterized LOC4339170(LOC4339170) coding protein psRNATarget
CT837839.1
ncRNA:24   CAGUAAGAUCGUAAAGGGUAUAAA   1
  *||||||||||||||||||*||||
targets:956   AUCAUUCUAGCAUUUCCCACAUUU   979

1.5 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA105C15, full insert sequence NA coding protein psRNATarget
XM_015788299.1
ncRNA:24   CAGUAAGAUCGUAAAGGGUAUAAA   1
  |||||||||||||||||||*|||*
targets:630   GUCAUUCUAGCAUUUCCCACAUUC   653

2.5 PREDICTED: Oryza sativa Japonica Group GPI-anchored protein LORELEI (LOC4340837), transcript variant X1, mRNA GPI-anchored protein LORELEI(LOC4340837) coding protein psRNATarget
XM_015788302.1
ncRNA:24   CAGUAAGAUCGUAAAGGGUAUAAA   1
  |||||||||||||||||||*|||*
targets:608   GUCAUUCUAGCAUUUCCCACAUUC   631

2.5 PREDICTED: Oryza sativa Japonica Group GPI-anchored protein LORELEI (LOC4340837), transcript variant X3, mRNA GPI-anchored protein LORELEI(LOC4340837) coding protein psRNATarget
XM_015788300.1
ncRNA:24   CAGUAAGAUCGUAAAGGGUAUAAA   1
  |||||||||||||||||||*|||*
targets:599   GUCAUUCUAGCAUUUCCCACAUUC   622

2.5 PREDICTED: Oryza sativa Japonica Group GPI-anchored protein LORELEI (LOC4340837), transcript variant X2, mRNA GPI-anchored protein LORELEI(LOC4340837) coding protein psRNATarget
AK100772.1
ncRNA:24   CAGUAAGAUCGUAAAGGGUAUAAA   1
  |||||||||||||||||||*|||*
targets:601   GUCAUUCUAGCAUUUCCCACAUUC   624

2.5 Oryza sativa Japonica Group cDNA clone:J023120A05, full insert sequence NA coding protein psRNATarget
AK288266.1
ncRNA:24   CAGUAAGAUCGUAAAGGGUAUAAA   1
  |*||||||||||||||=||||||*
targets:1541   GCCAUUCUAGCAUUUCUCAUAUUC   1564

2.5 Oryza sativa Japonica Group cDNA, clone: J090016H18, full insert sequence NA coding protein psRNATarget
XM_015774902.1
ncRNA:24   CAGUAAGAUCGUAAAGGGUAUAAA   1
  |||||**|||||||||||||||||
targets:2011   GUCAUCAUAGCAUUUCCCAUAUUU   2034

2.0 PREDICTED: Oryza sativa Japonica Group beclin-1-like protein (LOC4333557), mRNA beclin-1-like protein(LOC4333557) coding protein psRNATarget
AK066359.1
ncRNA:24   CAGUAAGAUCGUAAAGGGUAUAAA   1
  |||||**|||||||||||||||||
targets:1952   GUCAUCAUAGCAUUUCCCAUAUUU   1975

2.0 Oryza sativa Japonica Group cDNA clone:J013066O06, full insert sequence NA coding protein psRNATarget
AK099664.1
ncRNA:24   CAGUAAGAUCGUAAAGGGUAUAAA   1
  |||||**|||||||||||||||||
targets:1952   GUCAUCAUAGCAUUUCCCAUAUUU   1975

2.0 Oryza sativa Japonica Group cDNA clone:J013066P07, full insert sequence NA coding protein psRNATarget
XM_015766546.1
ncRNA:24   CAGUAAGAUCGUAAAGGGUAUAAA   1
  |*|*|||||||||||||||||||*
targets:2699   GACUUUCUAGCAUUUCCCAUAUUC   2722

1.0 PREDICTED: Oryza sativa Japonica Group probable LRR receptor-like serine/threonine-protein kinase IRK (LOC4327614), transcript variant X1, mRNA probable LRR receptor-like serine/threonine-protein kinase IRK(LOC4327614) coding protein psRNATarget
XM_015766550.1
ncRNA:24   CAGUAAGAUCGUAAAGGGUAUAAA   1
  |*|*|||||||||||||||||||*
targets:2699   GACUUUCUAGCAUUUCCCAUAUUC   2722

1.0 PREDICTED: Oryza sativa Japonica Group probable LRR receptor-like serine/threonine-protein kinase IRK (LOC4327614), transcript variant X4, mRNA probable LRR receptor-like serine/threonine-protein kinase IRK(LOC4327614) coding protein psRNATarget
XM_015766551.1
ncRNA:24   CAGUAAGAUCGUAAAGGGUAUAAA   1
  |*|*|||||||||||||||||||*
targets:2699   GACUUUCUAGCAUUUCCCAUAUUC   2722

1.0 PREDICTED: Oryza sativa Japonica Group probable LRR receptor-like serine/threonine-protein kinase IRK (LOC4327614), transcript variant X5, mRNA probable LRR receptor-like serine/threonine-protein kinase IRK(LOC4327614) coding protein psRNATarget
XM_015766549.1
ncRNA:24   CAGUAAGAUCGUAAAGGGUAUAAA   1
  |*|*|||||||||||||||||||*
targets:2333   GACUUUCUAGCAUUUCCCAUAUUC   2356

1.0 PREDICTED: Oryza sativa Japonica Group probable LRR receptor-like serine/threonine-protein kinase IRK (LOC4327614), transcript variant X3, mRNA probable LRR receptor-like serine/threonine-protein kinase IRK(LOC4327614) coding protein psRNATarget
XM_015766552.1
ncRNA:24   CAGUAAGAUCGUAAAGGGUAUAAA   1
  |*|*|||||||||||||||||||*
targets:1719   GACUUUCUAGCAUUUCCCAUAUUC   1742

1.0 PREDICTED: Oryza sativa Japonica Group probable LRR receptor-like serine/threonine-protein kinase IRK (LOC4327614), transcript variant X6, mRNA probable LRR receptor-like serine/threonine-protein kinase IRK(LOC4327614) coding protein psRNATarget
XM_015766553.1
ncRNA:24   CAGUAAGAUCGUAAAGGGUAUAAA   1
  |*|*|||||||||||||||||||*
targets:529   GACUUUCUAGCAUUUCCCAUAUUC   552

1.0 PREDICTED: Oryza sativa Japonica Group probable LRR receptor-like serine/threonine-protein kinase IRK (LOC4327614), transcript variant X7, mRNA probable LRR receptor-like serine/threonine-protein kinase IRK(LOC4327614) coding protein psRNATarget
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