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BaseInfo

ncRNA ID novel_osa_miR2932
Species Oryza sativa
Class miRNA
Genome position Chr1:21418035-21418080 [+]
Reference genome IRGSP-1.0
Source SRR2040383
Length 22
Mature sequence(if miRNA) 1 - CACUGACAUGUGGGUCCCACCU - 22
Stem-loop(if miRNA) --                 CACC
  CACUGACAUGUGGGUCC    U
  |||||||||||||||||
  GUGACUGUACACCCGGG    A
CG                 CCUU
Stem-loop sequence CACUGACAUGUGGGUCCCACCUAUUCCGGGCCCACAUGUCAGUGGC

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_015757333.1
ncRNA:22   UCCACCCUGGGUGUACAGUCAC   1
  ||||||||||||||||*|||||
targets:47   AGGUGGGACCCACAUGCCAGUG   68

1.5 PREDICTED: Oryza sativa Japonica Group AB hydrolase superfamily protein YfhM (LOC4349016), mRNA AB hydrolase superfamily protein YfhM(LOC4349016) coding protein psRNATarget
XM_015781565.1
ncRNA:22   UCCACCCUGGGUGUACAGUCAC   1
  ||||||||||||||||*|||||
targets:3177   AGGUGGGACCCACAUGCCAGUG   3198

1.5 PREDICTED: Oryza sativa Japonica Group trihelix transcription factor GTL1 (LOC4336540), transcript variant X2, mRNA trihelix transcription factor GTL1(LOC4336540) coding protein psRNATarget
XM_015781564.1
ncRNA:22   UCCACCCUGGGUGUACAGUCAC   1
  ||||||||||||||||*|||||
targets:3181   AGGUGGGACCCACAUGCCAGUG   3202

1.5 PREDICTED: Oryza sativa Japonica Group trihelix transcription factor GTL1 (LOC4336540), transcript variant X1, mRNA trihelix transcription factor GTL1(LOC4336540) coding protein psRNATarget
AK288408.1
ncRNA:22   UCCACCCUGGGUGUACAGUCAC   1
  |||||||||||||*||||||||
targets:1553   AGGUGGGACCCACCUGUCAGUG   1574

1.5 Oryza sativa Japonica Group cDNA, clone: J090030J08, full insert sequence NA coding protein psRNATarget
AB013449.2
ncRNA:22   UCCACCCUGGGUGUACAGUCAC   1
  **|||||=||||||||||||||
targets:4156   CUGUGGGGCCCACAUGUCAGUG   4177

1.0 Oryza sativa Japonica Group mRNA for Pib, complete cds NA coding protein psRNATarget
XM_015759967.1
ncRNA:22   UCCACCCUGGGUGUACAGUCAC   1
  *||*||||||||||||||||||
targets:861   UGGAGGGACCCACAUGUCAGUG   882

1.0 PREDICTED: Oryza sativa Japonica Group probable trans-2-enoyl-CoA reductase, mitochondrial (LOC9271884), mRNA probable trans-2-enoyl-CoA reductase, mitochondrial(LOC9271884) coding protein psRNATarget
XM_015765184.1
ncRNA:22   UCCACCCUGGGUGUACAGUCAC   1
  *||||||*||||||||||||||
targets:1283   CGGUGGGCCCCACAUGUCAGUG   1304

1.0 PREDICTED: Oryza sativa Japonica Group mini-chromosome maintenance complex-binding protein (LOC4327146), mRNA mini-chromosome maintenance complex-binding protein(LOC4327146) coding protein psRNATarget
XM_015786911.1
ncRNA:22   UCCACCCUGGGUGUACAGUCAC   1
  **|||||||||||||||||||*
targets:6   CAGUGGGACCCACAUGUCAGUU   27

1.0 PREDICTED: Oryza sativa Japonica Group probable sucrose-phosphate synthase 5 (LOC107281310), mRNA probable sucrose-phosphate synthase 5(LOC107281310) coding protein psRNATarget
XM_015779813.1
ncRNA:22   UCCACCCUGGGUGUACAGUCAC   1
  **|||||||||||||||||||*
targets:34   CCGUGGGACCCACAUGUCAGUU   55

1.0 PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4324243 (LOC4324243), mRNA uncharacterized LOC4324243(LOC4324243) coding protein psRNATarget
XM_015784848.1
ncRNA:22   UCCACCCUGGGUGUACAGUCAC   1
  **|||||||||||||||||||*
targets:1496   CAGUGGGACCCACAUGUCAGUC   1517

1.0 PREDICTED: Oryza sativa Japonica Group AT-hook motif nuclear-localized protein 21 (LOC9270289), mRNA AT-hook motif nuclear-localized protein 21(LOC9270289) coding protein psRNATarget
AK288162.1
ncRNA:22   UCCACCCUGGGUGUACAGUCAC   1
  **|||||||||||||||||||*
targets:884   CCGUGGGACCCACAUGUCAGUU   905

1.0 Oryza sativa Japonica Group cDNA, clone: J090001P20, full insert sequence NA coding protein psRNATarget
AK289155.1
ncRNA:22   UCCACCCUGGGUGUACAGUCAC   1
  =||||||=||||*|||||||||
targets:5254   GGGUGGGGCCCAGAUGUCAGUG   5275

2.5 Oryza sativa Japonica Group cDNA, clone: J090099O20, full insert sequence NA coding protein psRNATarget
AK242025.1
ncRNA:22   UCCACCCUGGGUGUACAGUCAC   1
  |*|||||*||||||||||||||
targets:677   AUGUGGGCCCCACAUGUCAGUG   698

1.0 Oryza sativa Japonica Group cDNA, clone: J075112L09, full insert sequence NA coding protein psRNATarget
AK243116.1
ncRNA:22   UCCACCCUGGGUGUACAGUCAC   1
  |||||||*|||||*||||||||
targets:874   AGGUGGGCCCCACCUGUCAGUG   895

2.5 Oryza sativa Japonica Group cDNA, clone: J100027L22, full insert sequence NA coding protein psRNATarget
XM_015795982.1
ncRNA:22   UCCACCCUGGGUGUACAGUCAC   1
  |||||||*|||||*||||||||
targets:868   AGGUGGGCCCCACCUGUCAGUG   889

2.5 PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4346684 (LOC4346684), mRNA uncharacterized LOC4346684(LOC4346684) coding protein psRNATarget
XM_015790714.1
ncRNA:22   UCCACCCUGGGUGUACAGUCAC   1
  |*|||||*||||||||||||||
targets:1311   AUGUGGGCCCCACAUGUCAGUG   1332

1.0 PREDICTED: Oryza sativa Japonica Group uncharacterized LOC107278348 (LOC107278348), mRNA uncharacterized LOC107278348(LOC107278348) coding protein psRNATarget
XM_015795534.1
ncRNA:22   UCCACCCUGGGUGUACAGUCAC   1
  |*|||||*||||||||||||||
targets:28   AUGUGGGCCCCACAUGUCAGUG   49

1.0 PREDICTED: Oryza sativa Japonica Group DNA polymerase zeta processivity subunit (LOC4346177), transcript variant X2, mRNA DNA polymerase zeta processivity subunit(LOC4346177) coding protein psRNATarget
XM_015774859.1
ncRNA:22   UCCACCCUGGGUGUACAGUCAC   1
  |*|||||*||||||||||||||
targets:298   AUGUGGGCCCCACAUGUCAGUG   319

1.0 PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4333938 (LOC4333938), mRNA uncharacterized LOC4333938(LOC4333938) coding protein psRNATarget
AK106706.1
ncRNA:22   UCCACCCUGGGUGUACAGUCAC   1
  |*|||||*||||||||||||||
targets:298   AUGUGGGCCCCACAUGUCAGUG   319

1.0 Oryza sativa Japonica Group cDNA clone:002-114-E11, full insert sequence NA coding protein psRNATarget
XM_015793086.1
ncRNA:22   UCCACCCUGGGUGUACAGUCAC   1
  |*|||||*||||||||||||||
targets:54   AUGUGGGCCCCACAUGUCAGUG   75

1.0 PREDICTED: Oryza sativa Japonica Group DEAD-box ATP-dependent RNA helicase 30 (LOC9271802), transcript variant X1, mRNA DEAD-box ATP-dependent RNA helicase 30(LOC9271802) coding protein psRNATarget
AK066077.1
ncRNA:22   UCCACCCUGGGUGUACAGUCAC   1
  |*|||||*||||||||||||||
targets:2621   AUGUGGGCCCCACAUGUCAGUG   2642

1.0 Oryza sativa Japonica Group cDNA clone:J013051F05, full insert sequence NA coding protein psRNATarget
XM_015795533.1
ncRNA:22   UCCACCCUGGGUGUACAGUCAC   1
  |*|||||*||||||||||||||
targets:28   AUGUGGGCCCCACAUGUCAGUG   49

1.0 PREDICTED: Oryza sativa Japonica Group DNA polymerase zeta processivity subunit (LOC4346177), transcript variant X1, mRNA DNA polymerase zeta processivity subunit(LOC4346177) coding protein psRNATarget
AK073899.1
ncRNA:22   UCCACCCUGGGUGUACAGUCAC   1
  |*|||||*||||||||||||||
targets:2330   AUGUGGGCCCCACAUGUCAGUG   2351

1.0 Oryza sativa Japonica Group cDNA clone:J033072H18, full insert sequence NA coding protein psRNATarget
XM_015771970.1
ncRNA:22   UCCACCCUGGGUGUACAGUCAC   1
  |*|||||*||||||||||||||
targets:3499   AUGUGGGCCCCACAUGUCAGUG   3520

1.0 PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4329708 (LOC4329708), mRNA uncharacterized LOC4329708(LOC4329708) coding protein psRNATarget
AK104790.1
ncRNA:22   UCCACCCUGGGUGUACAGUCAC   1
  **||||||||||||||||||**
targets:954   UAGUGGGACCCACAUGUCAGAA   975

2.5 Oryza sativa Japonica Group cDNA clone:001-039-F03, full insert sequence NA coding protein psRNATarget
AK066967.1
ncRNA:22   UCCACCCUGGGUGUACAGUCAC   1
  **||||||||||||||||||**
targets:955   UAGUGGGACCCACAUGUCAGAA   976

2.5 Oryza sativa Japonica Group cDNA clone:J013090L19, full insert sequence NA coding protein psRNATarget
AK120243.1
ncRNA:22   UCCACCCUGGGUGUACAGUCAC   1
  **||||||||||||||||||**
targets:955   UAGUGGGACCCACAUGUCAGAA   976

2.5 Oryza sativa Japonica Group cDNA clone:J013044H03, full insert sequence NA coding protein psRNATarget
LQ235881.1
ncRNA:22   UCCACCCUGGGUGUACAGUCAC   1
  **|||||=|||||||||||*||
targets:41   CUGUGGGGCCCACAUGUCAAUG   62

2.5 Sequence 1876 from Patent EP2985353 NA coding protein psRNATarget
HI403751.1
ncRNA:22   UCCACCCUGGGUGUACAGUCAC   1
  **|||||=|||||||||||*||
targets:41   CUGUGGGGCCCACAUGUCAAUG   62

2.5 Sequence 1876 from Patent EP2074227 NA coding protein psRNATarget
JB164212.1
ncRNA:22   UCCACCCUGGGUGUACAGUCAC   1
  **|||||=|||||||||||*||
targets:41   CUGUGGGGCCCACAUGUCAAUG   62

2.5 Sequence 1876 from Patent EP2559767 NA coding protein psRNATarget
AK287610.1
ncRNA:22   UCCACCCUGGGUGUACAGUCAC   1
  |*|||||=|||||||||*||||
targets:154   ACGUGGGGCCCACAUGUAAGUG   175

2.5 Oryza sativa Japonica Group cDNA, clone: J065058M04, full insert sequence NA coding protein psRNATarget
AK288724.1
ncRNA:22   UCCACCCUGGGUGUACAGUCAC   1
  |*|||||=|||||||||*||||
targets:3373   AAGUGGGGCCCACAUGUAAGUG   3394

2.5 Oryza sativa Japonica Group cDNA, clone: J090063A16, full insert sequence NA coding protein psRNATarget
XM_015790985.1
ncRNA:22   UCCACCCUGGGUGUACAGUCAC   1
  |*|||||=|||||||||*||||
targets:3367   AAGUGGGGCCCACAUGUAAGUG   3388

2.5 PREDICTED: Oryza sativa Japonica Group uncharacterized LOC107278583 (LOC107278583), mRNA uncharacterized LOC107278583(LOC107278583) coding protein psRNATarget
XM_015755276.1
ncRNA:22   UCCACCCUGGGUGUACAGUCAC   1
  **|||||=|||||*||||||||
targets:1931   CAGUGGGGCCCACCUGUCAGUG   1952

2.5 PREDICTED: Oryza sativa Japonica Group cytokinin hydroxylase (LOC9269428), mRNA cytokinin hydroxylase(LOC9269428) coding protein psRNATarget
XM_015793192.1
ncRNA:22   UCCACCCUGGGUGUACAGUCAC   1
  |*|||||||||||||||||*|*
targets:414   AUGUGGGACCCACAUGUCACUU   435

2.5 PREDICTED: Oryza sativa Japonica Group ubiquitin carboxyl-terminal hydrolase 2 (LOC4346109), transcript variant X4, mRNA ubiquitin carboxyl-terminal hydrolase 2(LOC4346109) coding protein psRNATarget
XM_015793188.1
ncRNA:22   UCCACCCUGGGUGUACAGUCAC   1
  |*|||||||||||||||||*|*
targets:414   AUGUGGGACCCACAUGUCACUU   435

2.5 PREDICTED: Oryza sativa Japonica Group ubiquitin carboxyl-terminal hydrolase 2 (LOC4346109), transcript variant X1, mRNA ubiquitin carboxyl-terminal hydrolase 2(LOC4346109) coding protein psRNATarget
CT835601.1
ncRNA:22   UCCACCCUGGGUGUACAGUCAC   1
  **||||||||||||||*||||*
targets:131   CCGUGGGACCCACAUGCCAGUU   152

2.5 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSN028C02, full insert sequence NA coding protein psRNATarget
XM_015793189.1
ncRNA:22   UCCACCCUGGGUGUACAGUCAC   1
  |*|||||||||||||||||*|*
targets:414   AUGUGGGACCCACAUGUCACUU   435

2.5 PREDICTED: Oryza sativa Japonica Group ubiquitin carboxyl-terminal hydrolase 2 (LOC4346109), transcript variant X2, mRNA ubiquitin carboxyl-terminal hydrolase 2(LOC4346109) coding protein psRNATarget
XM_015793190.1
ncRNA:22   UCCACCCUGGGUGUACAGUCAC   1
  |*|||||||||||||||||*|*
targets:414   AUGUGGGACCCACAUGUCACUU   435

2.5 PREDICTED: Oryza sativa Japonica Group ubiquitin carboxyl-terminal hydrolase 2 (LOC4346109), transcript variant X3, mRNA ubiquitin carboxyl-terminal hydrolase 2(LOC4346109) coding protein psRNATarget
AK288358.1
ncRNA:22   UCCACCCUGGGUGUACAGUCAC   1
  |*||||||||||||||*||||*
targets:1536   AUGUGGGACCCACAUGCCAGUU   1557

2.5 Oryza sativa Japonica Group cDNA, clone: J090024L19, full insert sequence NA coding protein psRNATarget
XM_015790047.1
ncRNA:22   UCCACCCUGGGUGUACAGUCAC   1
  **|||||*|||||||||||||*
targets:1271   UUGUGGGUCCCACAUGUCAGUA   1292

2.0 PREDICTED: Oryza sativa Japonica Group uncharacterized LOC107278742 (LOC107278742), transcript variant X2, mRNA uncharacterized LOC107278742(LOC107278742) coding protein psRNATarget
XM_015790046.1
ncRNA:22   UCCACCCUGGGUGUACAGUCAC   1
  **|||||*|||||||||||||*
targets:1274   UUGUGGGUCCCACAUGUCAGUA   1295

2.0 PREDICTED: Oryza sativa Japonica Group uncharacterized LOC107278742 (LOC107278742), transcript variant X1, mRNA uncharacterized LOC107278742(LOC107278742) coding protein psRNATarget
AK065740.1
ncRNA:22   UCCACCCUGGGUGUACAGUCAC   1
  **|||||*|||||||||||||*
targets:9   UAGUGGGUCCCACAUGUCAGUC   30

2.0 Oryza sativa Japonica Group cDNA clone:J013042N04, full insert sequence NA coding protein psRNATarget
XM_015779821.1
ncRNA:22   UCCACCCUGGGUGUACAGUCAC   1
  **|||||||||||||||*|||*
targets:13   CCGUGGGACCCACAUGUAAGUU   34

2.5 PREDICTED: Oryza sativa Japonica Group nuclear poly(A) polymerase 4 (LOC4324242), mRNA nuclear poly(A) polymerase 4(LOC4324242) coding protein psRNATarget
XM_015772623.1
ncRNA:22   UCCACCCUGGGUGUACAGUCAC   1
  =||*|*|=||||||||||||||
targets:16   GGGCGUGGCCCACAUGUCAGUG   37

3.0 PREDICTED: Oryza sativa Japonica Group uncharacterized protein YKR070W (LOC4332467), transcript variant X1, mRNA uncharacterized protein YKR070W(LOC4332467) coding protein psRNATarget
AK121300.1
ncRNA:22   UCCACCCUGGGUGUACAGUCAC   1
  =||*|*|=||||||||||||||
targets:22   GGGCGUGGCCCACAUGUCAGUG   43

3.0 Oryza sativa Japonica Group cDNA clone:J023110L17, full insert sequence NA coding protein psRNATarget
XM_015759878.1
ncRNA:22   UCCACCCUGGGUGUACAGUCAC   1
  =*|||||||||||||||||*|*
targets:97   GUGUGGGACCCACAUGUCAUUC   118

2.5 PREDICTED: Oryza sativa Japonica Group probable inactive leucine-rich repeat receptor-like protein kinase At1g66830 (LOC4350326), mRNA probable inactive leucine-rich repeat receptor-like protein kinase At1g66830(LOC4350326) coding protein psRNATarget
AK288431.1
ncRNA:22   UCCACCCUGGGUGUACAGUCAC   1
  **|||||||||||||||||*|*
targets:690   UAGUGGGACCCACAUGUCAUUU   711

2.5 Oryza sativa Japonica Group cDNA, clone: J090033G11, full insert sequence NA coding protein psRNATarget
XM_015775155.1
ncRNA:22   UCCACCCUGGGUGUACAGUCAC   1
  =****|||||||||||||||||
targets:13   GCCAUGGACCCACAUGUCAGUG   34

2.0 PREDICTED: Oryza sativa Japonica Group NADH dehydrogenase [ubiquinone] iron-sulfur protein 1, mitochondrial (LOC4333901), mRNA NADH dehydrogenase [ubiquinone] iron-sulfur protein 1, mitochondrial(LOC4333901) coding protein psRNATarget
XM_015758454.1
ncRNA:22   UCCACCCUGGGUGUACAGUCAC   1
  |*|||||*|||||||||||*||
targets:757   AUGUGGGCCCCACAUGUCAAUG   778

2.5 PREDICTED: Oryza sativa Japonica Group probable serine/threonine-protein kinase At1g54610 (LOC107279156), mRNA probable serine/threonine-protein kinase At1g54610(LOC107279156) coding protein psRNATarget
AK108132.1
ncRNA:22   UCCACCCUGGGUGUACAGUCAC   1
  |*|||||*||||||||*|||||
targets:733   AUGUGGGCCCCACAUGGCAGUG   754

2.5 Oryza sativa Japonica Group cDNA clone:002-139-D11, full insert sequence NA coding protein psRNATarget
XM_015779262.1
ncRNA:22   UCCACCCUGGGUGUACAGUCAC   1
  |*|||||*||||||*|||||||
targets:1075   AUGUGGGCCCCACAGGUCAGUG   1096

2.5 PREDICTED: Oryza sativa Japonica Group uncharacterized LOC107276840 (LOC107276840), mRNA uncharacterized LOC107276840(LOC107276840) coding protein psRNATarget
AK242082.1
ncRNA:22   UCCACCCUGGGUGUACAGUCAC   1
  |*|||||*|||||||||*||||
targets:1075   ACGUGGGCCCCACAUGUAAGUG   1096

2.5 Oryza sativa Japonica Group cDNA, clone: J075138F19, full insert sequence NA coding protein psRNATarget
AK069167.1
ncRNA:22   UCCACCCUGGGUGUACAGUCAC   1
  |*|||||*|||||||||||*||
targets:750   AUGUGGGCCCCACAUGUCAAUG   771

2.5 Oryza sativa Japonica Group cDNA clone:J023009D19, full insert sequence NA coding protein psRNATarget
XM_015789994.1
ncRNA:22   UCCACCCUGGGUGUACAGUCAC   1
  |*||||*||||||||||||*||
targets:1140   AAGUGGAACCCACAUGUCAAUG   1161

2.5 PREDICTED: Oryza sativa Japonica Group cytosolic sulfotransferase 12 (LOC4343853), mRNA cytosolic sulfotransferase 12(LOC4343853) coding protein psRNATarget
AK105239.1
ncRNA:22   UCCACCCUGGGUGUACAGUCAC   1
  |*||||*||||||||||||*||
targets:1153   AAGUGGAACCCACAUGUCAAUG   1174

2.5 Oryza sativa Japonica Group cDNA clone:001-113-B04, full insert sequence NA coding protein psRNATarget
XM_015793999.1
ncRNA:22   UCCACCCUGGGUGUACAGUCAC   1
  |*|||||*|||||||||*||||
targets:1256   ACGUGGGCCCCACAUGUAAGUG   1277

2.5 PREDICTED: Oryza sativa Japonica Group uncharacterized LOC9272620 (LOC9272620), mRNA uncharacterized LOC9272620(LOC9272620) coding protein psRNATarget
AK289098.1
ncRNA:22   UCCACCCUGGGUGUACAGUCAC   1
  |*||*||*||||||||||||||
targets:1722   AUGUAGGUCCCACAUGUCAGUG   1743

2.0 Oryza sativa Japonica Group cDNA, clone: J090096E23, full insert sequence NA coding protein psRNATarget
XM_015783142.1
ncRNA:22   UCCACCCUGGGUGUACAGUCAC   1
  =*|||||*||||||||||||*|
targets:282   GCGUGGGCCCCACAUGUCAGCG   303

2.5 PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4338975 (LOC4338975), mRNA uncharacterized LOC4338975(LOC4338975) coding protein psRNATarget
XM_015787285.1
ncRNA:22   UCCACCCUGGGUGUACAGUCAC   1
  **|||||*||||||*|||||||
targets:1024   UUGUGGGUCCCACACGUCAGUG   1045

2.5 PREDICTED: Oryza sativa Japonica Group very-long-chain 3-oxoacyl-CoA reductase 1-like (LOC107276302), mRNA very-long-chain 3-oxoacyl-CoA reductase 1-like(LOC107276302) coding protein psRNATarget
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