Search result

BaseInfo

ncRNA ID	novel_osa_miR2931
Species	Oryza sativa
Class	miRNA
Genome position	Chr12:24279535-24279603 [-]
Reference genome	IRGSP-1.0
Source	SRR2040383;SRR2040384;SRR2040398;SRR2040402;SRR1738219
Length	24
Mature sequence(if miRNA)	1 - AGAUCCAACGAUCGGAAACGACUU - 24
Stem-loop(if miRNA)	--A      A    A          ACAA  UC A    UCGUUU CGAU GUUGGAUCUA    UG  C U    |||||| |||| ||||||||||    ||  | C    AGCAAA GCUA CAACCUAGAU    AC  G C UUC      G    G          --CA  CC U
Stem-loop sequence	AUCGUUUACGAUAGUUGGAUCUAACAAUGUCCAUCCUGCCCAACUAGAUCCAACGAUCGGAAACGACUU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
LQ236069.1	ncRNA:24   UUCAGCAAAGGCUAGCAACCUAGA   1   ||*|||||||=||||||||||||| targets:21   AAAUCGUUUCUGAUCGUUGGAUCU   44 Target Full Sequence	1.0	Sequence 2064 from Patent EP2985353	NA	coding protein	psRNATarget
HI403939.1	ncRNA:24   UUCAGCAAAGGCUAGCAACCUAGA   1   ||*|||||||=||||||||||||| targets:21   AAAUCGUUUCUGAUCGUUGGAUCU   44 Target Full Sequence	1.0	Sequence 2064 from Patent EP2074227	NA	coding protein	psRNATarget
JB164400.1	ncRNA:24   UUCAGCAAAGGCUAGCAACCUAGA   1   ||*|||||||=||||||||||||| targets:21   AAAUCGUUUCUGAUCGUUGGAUCU   44 Target Full Sequence	1.0	Sequence 2064 from Patent EP2559767	NA	coding protein	psRNATarget
LQ236112.1	ncRNA:24   UUCAGCAAAGGCUAGCAACCUAGA   1   ||*|||||||=||||||||||||| targets:53   AAAUCGUUUCUGAUCGUUGGAUCU   76 Target Full Sequence	1.0	Sequence 2107 from Patent EP2985353	NA	coding protein	psRNATarget
JB164443.1	ncRNA:24   UUCAGCAAAGGCUAGCAACCUAGA   1   ||*|||||||=||||||||||||| targets:53   AAAUCGUUUCUGAUCGUUGGAUCU   76 Target Full Sequence	1.0	Sequence 2107 from Patent EP2559767	NA	coding protein	psRNATarget
HI403982.1	ncRNA:24   UUCAGCAAAGGCUAGCAACCUAGA   1   ||*|||||||=||||||||||||| targets:53   AAAUCGUUUCUGAUCGUUGGAUCU   76 Target Full Sequence	1.0	Sequence 2107 from Patent EP2074227	NA	coding protein	psRNATarget
LQ236249.1	ncRNA:24   UUCAGCAAAGGCUAGCAACCUAGA   1   ||*|||||||=||||||||||||| targets:54   AAAUCGUUUCUGAUCGUUGGAUCU   77 Target Full Sequence	1.0	Sequence 2244 from Patent EP2985353	NA	coding protein	psRNATarget
JB164580.1	ncRNA:24   UUCAGCAAAGGCUAGCAACCUAGA   1   ||*|||||||=||||||||||||| targets:54   AAAUCGUUUCUGAUCGUUGGAUCU   77 Target Full Sequence	1.0	Sequence 2244 from Patent EP2559767	NA	coding protein	psRNATarget
HI404119.1	ncRNA:24   UUCAGCAAAGGCUAGCAACCUAGA   1   ||*|||||||=||||||||||||| targets:54   AAAUCGUUUCUGAUCGUUGGAUCU   77 Target Full Sequence	1.0	Sequence 2244 from Patent EP2074227	NA	coding protein	psRNATarget
XM_015786123.1	ncRNA:24   UUCAGCAAAGGCUAGCAACCUAGA   1   ||*|=||||||||||||||||||| targets:663   AAAUUGUUUCCGAUCGUUGGAUCU   686 Target Full Sequence	0.0	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4340617 (LOC4340617), mRNA	uncharacterized LOC4340617(LOC4340617)	coding protein	psRNATarget
XM_015779655.1	ncRNA:24   UUCAGCAAAGGCUAGCAACCUAGA   1   ||*||||||=|||||||||||||| targets:1507   AAAUCGUUUUCGAUCGUUGGAUCU   1530 Target Full Sequence	1.0	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC107280684 (LOC107280684), transcript variant X1, mRNA	uncharacterized LOC107280684(LOC107280684)	coding protein	psRNATarget
AK287529.1	ncRNA:24   UUCAGCAAAGGCUAGCAACCUAGA   1   ||*|=||||||||||||||||||| targets:174   AAAUUGUUUCCGAUCGUUGGAUCU   197 Target Full Sequence	0.0	Oryza sativa Japonica Group cDNA, clone: J065001C03, full insert sequence	NA	coding protein	psRNATarget
AK240791.1	ncRNA:24   UUCAGCAAAGGCUAGCAACCUAGA   1   ||*|=||||||||||||||||||| targets:174   AAAUUGUUUCCGAUCGUUGGAUCU   197 Target Full Sequence	0.0	Oryza sativa Japonica Group cDNA, clone: J065001C03, full insert sequence	NA	coding protein	psRNATarget
AK063705.1	ncRNA:24   UUCAGCAAAGGCUAGCAACCUAGA   1   ||*|||||||=|||||||||||=| targets:527   AAAUCGUUUCUGAUCGUUGGAUUU   550 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:001-119-H03, full insert sequence	NA	coding protein	psRNATarget
EF626940.1	ncRNA:24   UUCAGCAAAGGCUAGCAACCUAGA   1   ||*|||||||=|||||||||||=| targets:1033   AAAUCGUUUCUGAUCGUUGGAUUU   1056 Target Full Sequence	2.5	Oryza sativa (indica cultivar-group) WIP4 (WIP4) mRNA, complete cds	NA	coding protein	psRNATarget
XM_015755547.1	ncRNA:24   UUCAGCAAAGGCUAGCAACCUAGA   1   ||*|||||||=|||||||||||=| targets:1508   AAAUCGUUUCUGAUCGUUGGAUUU   1531 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group zinc finger protein WIP2 (LOC4347420), mRNA	zinc finger protein WIP2(LOC4347420)	coding protein	psRNATarget
XM_015779289.1	ncRNA:24   UUCAGCAAAGGCUAGCAACCUAGA   1   ||*|=||||=|||||||||||||| targets:1503   AAAUUGUUUUCGAUCGUUGGAUCU   1526 Target Full Sequence	1.0	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC9266029 (LOC9266029), transcript variant X3, mRNA	uncharacterized LOC9266029(LOC9266029)	coding protein	psRNATarget
XM_015779283.1	ncRNA:24   UUCAGCAAAGGCUAGCAACCUAGA   1   ||*|=||||=|||||||||||||| targets:1694   AAAUUGUUUUCGAUCGUUGGAUCU   1717 Target Full Sequence	1.0	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC9266029 (LOC9266029), transcript variant X2, mRNA	uncharacterized LOC9266029(LOC9266029)	coding protein	psRNATarget
XM_015779276.1	ncRNA:24   UUCAGCAAAGGCUAGCAACCUAGA   1   ||*|=||||=|||||||||||||| targets:1701   AAAUUGUUUUCGAUCGUUGGAUCU   1724 Target Full Sequence	1.0	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC9266029 (LOC9266029), transcript variant X1, mRNA	uncharacterized LOC9266029(LOC9266029)	coding protein	psRNATarget
AK108234.1	ncRNA:24   UUCAGCAAAGGCUAGCAACCUAGA   1   ||*||*||||=||||||||||||| targets:453   AAAUCAUUUCUGAUCGUUGGAUCU   476 Target Full Sequence	2.0	Oryza sativa Japonica Group cDNA clone:002-140-G06, full insert sequence	NA	coding protein	psRNATarget
AK288876.1	ncRNA:24   UUCAGCAAAGGCUAGCAACCUAGA   1   ||*||*|||=|||||||||||||| targets:243   AAAUCAUUUUCGAUCGUUGGAUCU   266 Target Full Sequence	2.0	Oryza sativa Japonica Group cDNA, clone: J090078P15, full insert sequence	NA	coding protein	psRNATarget
HI404330.1	ncRNA:24   UUCAGCAAAGGCUAGCAACCUAGA   1   ||*||*|||||||||||||||*|| targets:5   AAAUCAUUUCCGAUCGUUGGACCU   28 Target Full Sequence	2.5	Sequence 2455 from Patent EP2074227	NA	coding protein	psRNATarget
JB164791.1	ncRNA:24   UUCAGCAAAGGCUAGCAACCUAGA   1   ||*||*|||||||||||||||*|| targets:5   AAAUCAUUUCCGAUCGUUGGACCU   28 Target Full Sequence	2.5	Sequence 2455 from Patent EP2559767	NA	coding protein	psRNATarget
LQ236460.1	ncRNA:24   UUCAGCAAAGGCUAGCAACCUAGA   1   ||*||*|||||||||||||||*|| targets:5   AAAUCAUUUCCGAUCGUUGGACCU   28 Target Full Sequence	2.5	Sequence 2455 from Patent EP2985353	NA	coding protein	psRNATarget