Search result

BaseInfo

ncRNA ID	novel_osa_miR2929
Species	Oryza sativa
Class	miRNA
Genome position	Chr6:29320128-29320245 [-]
Reference genome	IRGSP-1.0
Source	SRR1555747;SRR1555751;SRR1556018;SRR1556020
Length	22
Mature sequence(if miRNA)	97 - UUCCGGUUGGAUCUAUGUCGGA - 118
Stem-loop(if miRNA)	--    -   -    U  A G    -  G       -GC    UGUUCUUUCGAUAUUCAGC   UUCC GGU UGGA CU U UCGG AU GUUUCCU   AAAG                   G   |||| ||| |||| || | |||| || |||||||   ||||   AAGG CCA AUUU GA A AGCC UG UAGAGGG   CUAU                   U AG    U   U    -  - G    A  G       AAA    ACGAAGAGAGUAUCUCUAA
Stem-loop sequence	UUCCGGUUGGAUCUAUGUCGGAUGGUUUCCUGCAAAGUGUUCUUUCGAUAUUCAGCGUAAUCUCUAUGAGAGAAGCAUAUCAAAGGGAGAUGGUACCGAGAAGUUUAUACCUGGAAGA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
CT831342.1	ncRNA:22   AGGCUGUAUCUAGGUUGGCCUU   1   ||=||==*|||||||||||||| targets:614   UCUGAUGAAGAUCCAACCGGAA   635 Target Full Sequence	3.0	Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA117F12, full insert sequence	NA	coding protein	psRNATarget
AK109047.1	ncRNA:22   AGGCUGUAUCUAGGUUGGCCUU   1   ||=||==*|||||||||||||| targets:551   UCUGAUGAAGAUCCAACCGGAA   572 Target Full Sequence	3.0	Oryza sativa Japonica Group cDNA clone:002-154-D12, full insert sequence	NA	coding protein	psRNATarget
XM_015773557.1	ncRNA:22   AGGCUGUAUCUAGGUUGGCCUU   1   ||=||==*|||||||||||||| targets:676   UCUGAUGAAGAUCCAACCGGAA   697 Target Full Sequence	3.0	PREDICTED: Oryza sativa Japonica Group probable prolyl 4-hydroxylase 9 (LOC4334196), mRNA	probable prolyl 4-hydroxylase 9(LOC4334196)	coding protein	psRNATarget