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BaseInfo

ncRNA ID novel_osa_miR2928
Species Oryza sativa
Class miRNA
Genome position Chr12:24724999-24725151 [+]
Reference genome IRGSP-1.0
Source SRR2040383
Length 24
Mature sequence(if miRNA) 130 - AUAUAUGUUAAUGAAUCUAGGCAC - 153
Stem-loop(if miRNA) --                  CA             A   UC       A    CAU G      --      -  CAU
  GUUUAGAUUUAUUAACAU  AUAUGAAUGUGGG AAU  UAGAAUG CUUA   U UGAAAC  AGAUGG AG   G
  ||||||||||||||||||  ||||||||||||| |||  ||||||| ||||   | ||||||  |||||| ||
  CGGAUCUAAGUAAUUGUA  UAUACUUACACUC UUA  AUUUUAU GAAU   G AUUUUG  UCUAUC UC   U
CA                  UA             G   CA       A    AUU G      CC      A  UAU
Stem-loop sequence GUUUAGAUUUAUUAACAUCAAUAUGAAUGUGGGAAAUUCUAGAAUGACUUACAUUGUGAAACAGAUGGAGCAUGUUAUCUACUAUCUCCGUUUUAGGUUAUAAGAUAUUUUAACAUUGCUCACAUUCAUAUAUAUGUUAAUGAAUCUAGGCAC

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
AK109562.1
ncRNA:24   CACGGAUCUAAGUAAUUGUAUAUA   1
  ||||||||||||||||||||||||
targets:776   GUGCCUAGAUUCAUUAACAUAUAU   799

0.0 Oryza sativa Japonica Group cDNA clone:002-128-B06, full insert sequence NA coding protein psRNATarget
XM_015791317.1
ncRNA:24   CACGGAUCUAAGUAAUUGUAUAUA   1
  *||=||||||||||||||||||||
targets:4495   AUGUCUAGAUUCAUUAACAUAUAU   4518

0.0 PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4342778 (LOC4342778), transcript variant X1, mRNA uncharacterized LOC4342778(Os07g0231700) coding protein psRNATarget
AK288568.1
ncRNA:24   CACGGAUCUAAGUAAUUGUAUAUA   1
  *||=||||||||||||||||||||
targets:1439   AUGUCUAGAUUCAUUAACAUAUAU   1462

0.0 Oryza sativa Japonica Group cDNA, clone: J090048B06, full insert sequence NA coding protein psRNATarget
XM_015787712.1
ncRNA:24   CACGGAUCUAAGUAAUUGUAUAUA   1
  *||=||||||||||||||||||||
targets:589   AUGUCUAGAUUCAUUAACAUAUAU   612

0.0 PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4340081 (LOC4340081), transcript variant X4, mRNA uncharacterized LOC4340081(Os06g0142000) coding protein psRNATarget
XM_015787709.1
ncRNA:24   CACGGAUCUAAGUAAUUGUAUAUA   1
  *||=||||||||||||||||||||
targets:589   AUGUCUAGAUUCAUUAACAUAUAU   612

0.0 PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4340081 (LOC4340081), transcript variant X1, mRNA uncharacterized LOC4340081(Os06g0142000) coding protein psRNATarget
XM_015795948.1
ncRNA:24   CACGGAUCUAAGUAAUUGUAUAUA   1
  *||=||||||||||||||||||||
targets:1062   AUGUCUAGAUUCAUUAACAUAUAU   1085

0.0 PREDICTED: Oryza sativa Japonica Group 60S ribosomal protein L18a-like protein (LOC4326318), mRNA 60S ribosomal protein L18a-like protein(LOC4326318) coding protein psRNATarget
CT837804.1
ncRNA:24   CACGGAUCUAAGUAAUUGUAUAUA   1
  *||=||||||||||||||||||||
targets:925   AUGUCUAGAUUCAUUAACAUAUAU   948

0.0 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA115N24, full insert sequence NA coding protein psRNATarget
AK287948.1
ncRNA:24   CACGGAUCUAAGUAAUUGUAUAUA   1
  *||=||||||||||||||||||||
targets:912   AUGUCUAGAUUCAUUAACAUAUAU   935

0.0 Oryza sativa Japonica Group cDNA, clone: J075028D01, full insert sequence NA coding protein psRNATarget
AK099933.1
ncRNA:24   CACGGAUCUAAGUAAUUGUAUAUA   1
  *||=|||||||||||||=||||||
targets:410   AUGUCUAGAUUCAUUAAUAUAUAU   433

1.5 Oryza sativa Japonica Group cDNA clone:J013119E02, full insert sequence NA coding protein psRNATarget
XM_015755177.1
ncRNA:24   CACGGAUCUAAGUAAUUGUAUAUA   1
  *||=||||||||||||||=|||||
targets:1807   AUGUCUAGAUUCAUUAACGUAUAU   1830

1.5 PREDICTED: Oryza sativa Japonica Group glutathione S-transferase T3 (LOC4346703), transcript variant X1, mRNA glutathione S-transferase T3(LOC4346703) coding protein psRNATarget
XM_015781389.1
ncRNA:24   CACGGAUCUAAGUAAUUGUAUAUA   1
  *||==|||||||||||||||||||
targets:802   AUGUUUAGAUUCAUUAACAUAUAU   825

0.0 PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4336685 (LOC4336685), transcript variant X1, mRNA uncharacterized LOC4336685(LOC4336685) coding protein psRNATarget
XM_015781390.1
ncRNA:24   CACGGAUCUAAGUAAUUGUAUAUA   1
  *||==|||||||||||||||||||
targets:802   AUGUUUAGAUUCAUUAACAUAUAU   825

0.0 PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4336685 (LOC4336685), transcript variant X2, mRNA uncharacterized LOC4336685(LOC4336685) coding protein psRNATarget
XM_015794357.1
ncRNA:24   CACGGAUCUAAGUAAUUGUAUAUA   1
  *||=||||||||||||||||=|||
targets:1372   UUGUCUAGAUUCAUUAACAUGUAU   1395

1.5 PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4327949 (LOC4327949), mRNA uncharacterized LOC4327949(LOC4327949) coding protein psRNATarget
XM_015755249.1
ncRNA:24   CACGGAUCUAAGUAAUUGUAUAUA   1
  *||=||||||||||||||=|||||
targets:791   AUGUCUAGAUUCAUUAACGUAUAU   814

1.5 PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4347372 (LOC4347372), mRNA uncharacterized LOC4347372(LOC4347372) coding protein psRNATarget
XM_015755201.1
ncRNA:24   CACGGAUCUAAGUAAUUGUAUAUA   1
  |||=||||||||||||||||*|||
targets:1135   GUGUCUAGAUUCAUUAACAUCUAU   1158

1.5 PREDICTED: Oryza sativa Japonica Group cinnamoyl-CoA reductase 1 (LOC9270429), transcript variant X2, mRNA cinnamoyl-CoA reductase 1(LOC9270429) coding protein psRNATarget
XM_015755199.1
ncRNA:24   CACGGAUCUAAGUAAUUGUAUAUA   1
  |||=||||||||||||||||*|||
targets:1132   GUGUCUAGAUUCAUUAACAUCUAU   1155

1.5 PREDICTED: Oryza sativa Japonica Group cinnamoyl-CoA reductase 1 (LOC9270429), transcript variant X1, mRNA cinnamoyl-CoA reductase 1(LOC9270429) coding protein psRNATarget
AK072372.1
ncRNA:24   CACGGAUCUAAGUAAUUGUAUAUA   1
  |||==|||||||||||||||*|||
targets:709   GUGUUUAGAUUCAUUAACAUUUAU   732

1.5 Oryza sativa Japonica Group cDNA clone:J023068F06, full insert sequence NA coding protein psRNATarget
AK120847.1
ncRNA:24   CACGGAUCUAAGUAAUUGUAUAUA   1
  |||==|||||||||||||||*|||
targets:554   GUGUUUAGAUUCAUUAACAUUUAU   577

1.5 Oryza sativa Japonica Group cDNA clone:J023023A10, full insert sequence NA coding protein psRNATarget
AK067363.1
ncRNA:24   CACGGAUCUAAGUAAUUGUAUAUA   1
  *||=|||*||||||||||||||||
targets:1020   AUGUCUACAUUCAUUAACAUAUAU   1043

1.0 Oryza sativa Japonica Group cDNA clone:J013100G02, full insert sequence NA coding protein psRNATarget
XM_015766247.1
ncRNA:24   CACGGAUCUAAGUAAUUGUAUAUA   1
  *|*=||||||||||||||||||||
targets:2552   AUAUCUAGAUUCAUUAACAUAUAU   2575

0.0 PREDICTED: Oryza sativa Japonica Group putative receptor protein kinase ZmPK1 (LOC107277300), mRNA putative receptor protein kinase ZmPK1(LOC107277300) coding protein psRNATarget
AK071625.1
ncRNA:24   CACGGAUCUAAGUAAUUGUAUAUA   1
  *||=|||||||||||*||||||||
targets:1339   CUGUCUAGAUUCAUUUACAUAUAU   1362

1.5 Oryza sativa Japonica Group cDNA clone:J023106F16, full insert sequence NA coding protein psRNATarget
XM_015767885.1
ncRNA:24   CACGGAUCUAAGUAAUUGUAUAUA   1
  ||*|||||||*|||||||||=|||
targets:2690   GUUCCUAGAUGCAUUAACAUGUAU   2713

2.5 PREDICTED: Oryza sativa Japonica Group phosphate transporter PHO1-1 (LOC9270401), mRNA phosphate transporter PHO1-1(LOC9270401) coding protein psRNATarget
AK242852.1
ncRNA:24   CACGGAUCUAAGUAAUUGUAUAUA   1
  ||*|||||||*|||||||||=|||
targets:2691   GUUCCUAGAUGCAUUAACAUGUAU   2714

2.5 Oryza sativa Japonica Group cDNA, clone: J090073D03, full insert sequence NA coding protein psRNATarget
AK241906.1
ncRNA:24   CACGGAUCUAAGUAAUUGUAUAUA   1
  ***=||||||||||||||||=|||
targets:1075   AAAUCUAGAUUCAUUAACAUGUAU   1098

1.5 Oryza sativa Japonica Group cDNA, clone: J075049G22, full insert sequence NA coding protein psRNATarget
AK072517.1
ncRNA:24   CACGGAUCUAAGUAAUUGUAUAUA   1
  *||=||||||||||||||||*||*
targets:1380   AUGUCUAGAUUCAUUAACAUCUAA   1403

2.5 Oryza sativa Japonica Group cDNA clone:J023133J02, full insert sequence NA coding protein psRNATarget
AK288472.1
ncRNA:24   CACGGAUCUAAGUAAUUGUAUAUA   1
  *||=||||||||||||||||*||*
targets:1472   AUGUCUAGAUUCAUUAACAUCUAA   1495

2.5 Oryza sativa Japonica Group cDNA, clone: J090037K20, full insert sequence NA coding protein psRNATarget
CT834348.1
ncRNA:24   CACGGAUCUAAGUAAUUGUAUAUA   1
  *||=*||||*||||||||||||||
targets:1429   AUGUAUAGACUCAUUAACAUAUAU   1452

1.0 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA106J11, full insert sequence NA coding protein psRNATarget
CT829159.1
ncRNA:24   CACGGAUCUAAGUAAUUGUAUAUA   1
  ***=||||||||||||*|||||||
targets:557   UAUUCUAGAUUCAUUAUCAUAUAU   580

1.5 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSN009P22, full insert sequence NA coding protein psRNATarget
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