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BaseInfo

ncRNA ID	novel_osa_miR2925
Species	Oryza sativa
Class	miRNA
Genome position	Chr12:19981811-19981859 [+]
Reference genome	IRGSP-1.0
Source	SRR2040383;SRR2040389;SRR2040397
Length	24
Mature sequence(if miRNA)	26 - AUCAACCGGGACUAAAGAUCGAUC - 49
Stem-loop(if miRNA)	--                         UCGAUCUUUAGUCCCGGUUGAUG   ||||||||||||||||||||||U   AGCUAGAAAUCAGGGCCAACUAU CU
Stem-loop sequence	UCGAUCUUUAGUCCCGGUUGAUGUUAUCAACCGGGACUAAAGAUCGAUC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
AK288796.1	ncRNA:24   CUAGCUAGAAAUCAGGGCCAACUA   1   ||||||||||||||||||||||=| targets:1826   GAUCGAUCUUUAGUCCCGGUUGGU   1849 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA, clone: J090070F05, full insert sequence	NA	coding protein	psRNATarget
AK288377.1	ncRNA:24   CUA--GCUAGAAAUCAGGGCCAACUA   1   |||--|||||||||||||||||||=| targets:1370   GAUAGCGAUCUUUAGUCCCGGUUGGU   1395 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA, clone: J090026K06, full insert sequence	NA	coding protein	psRNATarget
AK121178.1	ncRNA:24   CUAGCUAGAAAUCAGGGCCAACUA   1   ||-|||||||||||||||||||=| targets:1905   GA-CGAUCUUUAGUCCCGGUUGGU   1927 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA clone:J023083G22, full insert sequence	NA	coding protein	psRNATarget
AK121178.1	ncRNA:24   CUAGCUAGAAAUCAGGGCCAACUA   1   |||--||=||||||||||||*||| targets:1974   GAU--AUUUUUAGUCCCGGUCGAU   1995 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:J023083G22, full insert sequence	NA	coding protein	psRNATarget
AK288734.1	ncRNA:24   CUAGCUAGAAAUCAGGGCCAACUA   1   **|=||||||||||||||||||=| targets:43   AUUUGAUCUUUAGUCCCGGUUGGU   66 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA, clone: J090063I24, full insert sequence	NA	coding protein	psRNATarget
XM_015755226.1	ncRNA:24   CUAG--CUAGAAAUCAGGGCCAACUA   1   |||*--|||||||||||||||||||| targets:64   GAUGAGGAUCUUUAGUCCCGGUUGAU   89 Target Full Sequence	0.0	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC107278786 (LOC107278786), mRNA	uncharacterized LOC107278786(LOC107278786)	coding protein	psRNATarget
AK289098.1	ncRNA:24   CUAGCUAGAAAUCAGGGCCAACUA   1   *||*||||||||||||||||||=| targets:143   AAUAGAUCUUUAGUCCCGGUUGGU   166 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA, clone: J090096E23, full insert sequence	NA	coding protein	psRNATarget
AK289098.1	ncRNA:24   CUAGCUAGAAAUCAGGGCCAACUA   1   *||*||||||||||||||||||=| targets:234   AAUAGAUCUUUAGUCCCGGUUGGU   257 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA, clone: J090096E23, full insert sequence	NA	coding protein	psRNATarget
AK288224.1	ncRNA:24   CUAGC-UAGAAAUCAGGGCCAACUA   1   **|||-||||||||||||||||||| targets:1255   CCUCGGAUCUUUAGUCCCGGUUGAU   1279 Target Full Sequence	2.0	Oryza sativa Japonica Group cDNA, clone: J090012B15, full insert sequence	NA	coding protein	psRNATarget
AK288598.1	ncRNA:24   CUAGCUAGAAAUCAGGGCCAACUA   1   ***|||||||||||||||||||=| targets:966   UUACGAUCUUUAGUCCCGGUUGGU   989 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA, clone: J090051P05, full insert sequence	NA	coding protein	psRNATarget
XM_015755256.1	ncRNA:24   CUA--GCUAGAAAUCAGGGCCAACUA   1   *||--=||||||||||||||||||=| targets:137   AAUAAUGAUCUUUAGUCCCGGUUGGU   162 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4346665 (LOC4346665), transcript variant X2, mRNA	uncharacterized LOC4346665(LOC4346665)	coding protein	psRNATarget
AK288544.1	ncRNA:24   CUAGCUAGAAAUCAGGGCCAACUA   1   **|*|||||||||||||||||||| targets:1785   CCUAGAUCUUUAGUCCCGGUUGAU   1808 Target Full Sequence	0.0	Oryza sativa Japonica Group cDNA, clone: J090046G24, full insert sequence	NA	coding protein	psRNATarget
XM_015779829.1	ncRNA:24   CUAGCUAGAAAUCAGGGCCAACUA   1   |||-|||=|||||||||||||||* targets:1588   GAU-GAUUUUUAGUCCCGGUUGAA   1610 Target Full Sequence	2.0	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4335182 (LOC4335182), mRNA	uncharacterized LOC4335182(LOC4335182)	coding protein	psRNATarget
XM_015779829.1	ncRNA:24   CUAGCUAGAAAUCAGGGCCAACUA   1   *=**||||||||||||||||||=| targets:1696   CGAGGAUCUUUAGUCCCGGUUGGU   1719 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4335182 (LOC4335182), mRNA	uncharacterized LOC4335182(LOC4335182)	coding protein	psRNATarget
XM_015779829.1	ncRNA:24   CUAGCUAGAAAUCAGGGCCAACUA   1   *|||-||||||||||||||||*|| targets:1646   AAUC-AUCUUUAGUCCCGGUUCAU   1668 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4335182 (LOC4335182), mRNA	uncharacterized LOC4335182(LOC4335182)	coding protein	psRNATarget
XM_015759969.1	ncRNA:24   CUAGCUAGAAAUCAGGGCCAACUA   1   ||||-||||||||||||||||*|| targets:1868   GAUC-AUCUUUAGUCCCGGUUCAU   1890 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group F-box/LRR-repeat protein At3g58930 (LOC9269963), transcript variant X3, mRNA	F-box/LRR-repeat protein At3g58930(LOC9269963)	coding protein	psRNATarget
AK288424.1	ncRNA:24   CUAGCUAGAAAUCAGGGCCAACUA   1   ||||*||=||||||||||||||*| targets:2285   GAUCUAUUUUUAGUCCCGGUUGUU   2308 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J090032J12, full insert sequence	NA	coding protein	psRNATarget
AK288463.1	ncRNA:24   CUAGCUAGAAAUCAGGGCCAACUA   1   *||-|||||||||||||||||||* targets:422   AAU-GAUCUUUAGUCCCGGUUGAA   444 Target Full Sequence	1.0	Oryza sativa Japonica Group cDNA, clone: J090036E20, full insert sequence	NA	coding protein	psRNATarget
AK288463.1	ncRNA:24   CUAGCUAGAAAUCAGGGCCAACUA   1   *=**||||||||||||||||||=| targets:551   CGAGGAUCUUUAGUCCCGGUUGGU   574 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA, clone: J090036E20, full insert sequence	NA	coding protein	psRNATarget
XM_015759968.1	ncRNA:24   CUAGCUAGAAAUCAGGGCCAACUA   1   ||||-||||||||||||||||*|| targets:3366   GAUC-AUCUUUAGUCCCGGUUCAU   3388 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group F-box/LRR-repeat protein At3g58930 (LOC9269963), transcript variant X1, mRNA	F-box/LRR-repeat protein At3g58930(LOC9269963)	coding protein	psRNATarget
AK065811.1	ncRNA:24   CUA--GCUAGAAAUCAGGGCCAACUA   1   |||--|*||||||||||||||||||* targets:1866   GAUGCCCAUCUUUAGUCCCGGUUGAA   1891 Target Full Sequence	1.0	Oryza sativa Japonica Group cDNA clone:J013039F07, full insert sequence	NA	coding protein	psRNATarget
AK065811.1	ncRNA:24   CUAGCUAGAAAUCAGGGCCAACUA   1   **|**|||||||||||||||||=| targets:1901   ACUAAAUCUUUAGUCCCGGUUGGU   1924 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA clone:J013039F07, full insert sequence	NA	coding protein	psRNATarget
AK288191.1	ncRNA:24   CUAGCUAGAAAUCAGGGCCAACUA   1   **|=||||||||||||||||||*| targets:1558   UUUUGAUCUUUAGUCCCGGUUGUU   1581 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA, clone: J090007A11, full insert sequence	NA	coding protein	psRNATarget
XM_015755884.1	ncRNA:24   CUAGCUAGAAAUCAGGGCCAACUA   1   *||=-|||||||||||||||||=| targets:1371   AAUU-AUCUUUAGUCCCGGUUGGU   1393 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group S-norcoclaurine synthase 1 (LOC4346830), mRNA	S-norcoclaurine synthase 1(LOC4346830)	coding protein	psRNATarget
AK288438.1	ncRNA:24   CUAGCUAGAAAUCAGGGCCAACUA   1   **|**|||||||||||||||||=| targets:2359   ACUAAAUCUUUAGUCCCGGUUGGU   2382 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA, clone: J090034C21, full insert sequence	NA	coding protein	psRNATarget
XM_015790121.1	ncRNA:24   CUAGCUAGAAAUCAGGGCCAACUA   1   **|=*|||||||||||||||||=| targets:925   UUUUAAUCUUUAGUCCCGGUUGGU   948 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group putative disease resistance protein RGA4 (LOC107281518), transcript variant X2, mRNA	putative disease resistance protein RGA4(LOC107281518)	coding protein	psRNATarget
XM_015790121.1	ncRNA:24   CUAGCUAGAAAUCAGGGCCAACUA   1   *=*=||||||||||||||||||=* targets:969   UGCUGAUCUUUAGUCCCGGUUGGA   992 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group putative disease resistance protein RGA4 (LOC107281518), transcript variant X2, mRNA	putative disease resistance protein RGA4(LOC107281518)	coding protein	psRNATarget
CT837755.1	ncRNA:24   CUA--GCUAGAAAUCAGGGCCAACUA   1   |||--|*||=|||||||||||||||* targets:1898   GAUACCCAUUUUUAGUCCCGGUUGAA   1923 Target Full Sequence	2.0	Oryza sativa (indica cultivar-group) cDNA clone:OSIGCFA248M21, full insert sequence	NA	coding protein	psRNATarget
AK288859.1	ncRNA:24   CUAGCUAGAAAUCAGGGCCAACUA   1   *|**|||||||||||||||||||* targets:2193   AAAAGAUCUUUAGUCCCGGUUGAG   2216 Target Full Sequence	1.0	Oryza sativa Japonica Group cDNA, clone: J090076J15, full insert sequence	NA	coding protein	psRNATarget
AK288859.1	ncRNA:24   CUAGCUAGAAAUCAGGGCCAACUA   1   |||--|||||||||||||||||*| targets:2236   GAU--AUCUUUAGUCCCGGUUGUU   2257 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA, clone: J090076J15, full insert sequence	NA	coding protein	psRNATarget
XM_015774888.1	ncRNA:24   CUAGCUAGAAAUCAGGGCCAACUA   1   *||-|||||*|||||||||||||* targets:1384   AAU-GAUCUCUAGUCCCGGUUGAA   1406 Target Full Sequence	2.0	PREDICTED: Oryza sativa Japonica Group metacaspase-1 (LOC4333012), transcript variant X3, mRNA	metacaspase-1(LOC4333012)	coding protein	psRNATarget
XM_015774887.1	ncRNA:24   CUAGCUAGAAAUCAGGGCCAACUA   1   *||-|||||*|||||||||||||* targets:1390   AAU-GAUCUCUAGUCCCGGUUGAA   1412 Target Full Sequence	2.0	PREDICTED: Oryza sativa Japonica Group metacaspase-1 (LOC4333012), transcript variant X2, mRNA	metacaspase-1(LOC4333012)	coding protein	psRNATarget
LQ236051.1	ncRNA:24   CUAGCUAGAAAUCAGGGCCAACUA   1   |*|=*|||||||||||||||||=* targets:45   GUUUUAUCUUUAGUCCCGGUUGGG   68 Target Full Sequence	2.5	Sequence 2046 from Patent EP2985353	NA	coding protein	psRNATarget
HI403921.1	ncRNA:24   CUAGCUAGAAAUCAGGGCCAACUA   1   |*|=*|||||||||||||||||=* targets:45   GUUUUAUCUUUAGUCCCGGUUGGG   68 Target Full Sequence	2.5	Sequence 2046 from Patent EP2074227	NA	coding protein	psRNATarget
JB164382.1	ncRNA:24   CUAGCUAGAAAUCAGGGCCAACUA   1   |*|=*|||||||||||||||||=* targets:45   GUUUUAUCUUUAGUCCCGGUUGGG   68 Target Full Sequence	2.5	Sequence 2046 from Patent EP2559767	NA	coding protein	psRNATarget
AK066662.1	ncRNA:24   CUA--GCUAGAAAUCAGGGCCAACUA   1   |||--=*||||||||||||||*|||* targets:610   GAUACUCAUCUUUAGUCCCGGGUGAA   635 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:J013071A17, full insert sequence	NA	coding protein	psRNATarget
AK065634.1	ncRNA:24   CUAGCUAGAAAUCAGGGCCAACUA   1   *=||*|*=|||||||||||||||* targets:1896   UGUCCAGUUUUAGUCCCGGUUGAA   1919 Target Full Sequence	3.0	Oryza sativa Japonica Group cDNA clone:J013034I10, full insert sequence	NA	coding protein	psRNATarget
AK119916.1	ncRNA:24   CUAGCUAGAAAUCAGGGCCAACUA   1   *|***|*||||||||=|||||||| targets:360   UAAACAACUUUAGUCUCGGUUGAU   383 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:002-183-F10, full insert sequence	NA	coding protein	psRNATarget