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BaseInfo

ncRNA ID	novel_osa_miR2924
Species	Oryza sativa
Class	miRNA
Genome position	Chr10:21644041-21644228 [-]
Reference genome	IRGSP-1.0
Source	SRR2040383;SRR2040401;SRR2097778;SRR2098557;SRR3123651;SRR1738240
Length	24
Mature sequence(if miRNA)	1 - GCAAAAAGUCAACGGUGUCAUACA - 24
Stem-loop(if miRNA)	--                C  G      AG     AC   UA      CCA      -AAU            ------------U   AUUUGUUUUAUCA   UAUGACGCUGUUGACU UU GUAUAA  UUUGG  AUU  UCUUAU   UAAAAA    GUAUAAAUAUGU             GUG             U   |||||||||||||||| || ||||||  |||||  |||  ||||||   ||||||    ||||||||||||             |||   AUACUGUGGCAACUGA AA CGUAUU  GAACU  UAA  AGAAUA   AUUUUU    CAUAUUUAUACA             UCU             C AC                A  A      GU     GA   GC      ---      AGAU            UUUUUUUUCCAAA   GACAUCAAAGAAC
Stem-loop sequence	UAUGACGCUGUUGACUCUUGGUAUAAAGUUUGGACAUUUAUCUUAUCCAUAAAAAAAUGUAUAAAUAUGUUGUGAUUUGUUUUAUCAUCCAAGAAACUACAGUCUAAACCUUUUUUUUACAUAUUUAUACUAGAUUUUUAAUAAGACGAAUAGUCAAGUGUUAUGCAAAAAGUCAACGGUGUCAUACA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_015779878.1	ncRNA:24   ACAUACUGUGGCAACUGAAAAACG   1   ||||||||=||||||||||||||* targets:177   UGUAUGACGCCGUUGACUUUUUGA   200 Target Full Sequence	2.0	PREDICTED: Oryza sativa Japonica Group AT-hook motif nuclear-localized protein 9 (LOC4337449), mRNA	AT-hook motif nuclear-localized protein 9(LOC4337449)	coding protein	psRNATarget
XM_015772831.1	ncRNA:24   ACAUACUGUGGCAACUGAAAAACG   1   ||||||||=||||||||||||||* targets:2894   UGUAUGACGCCGUUGACUUUUUGA   2917 Target Full Sequence	2.0	PREDICTED: Oryza sativa Japonica Group cationic amino acid transporter 1 (LOC4333545), mRNA	cationic amino acid transporter 1(LOC4333545)	coding protein	psRNATarget
AK288883.1	ncRNA:24   ACAUACUGUGGCAACUGAAAAACG   1   ||||||||=|=||||||||||||* targets:908   UGUAUGACGCUGUUGACUUUUUGA   931 Target Full Sequence	3.0	Oryza sativa Japonica Group cDNA, clone: J090079H22, full insert sequence	NA	coding protein	psRNATarget
AK069441.1	ncRNA:24   ACAUACUGUGGCAACUGAAAAA-CG   1   |||*||||||||||||||||||-|| targets:4022   UGUUUGACACCGUUGACUUUUUAGC   4046 Target Full Sequence	3.0	Oryza sativa Japonica Group cDNA clone:J023022N16, full insert sequence	NA	coding protein	psRNATarget
AK243013.1	ncRNA:24   ACAUACUGUGGCAACUGAAAAA-CG   1   |||*||||||||||||||||||-|| targets:449   UGUUUGACACCGUUGACUUUUUAGC   473 Target Full Sequence	3.0	Oryza sativa Japonica Group cDNA, clone: J090098F15, full insert sequence	NA	coding protein	psRNATarget
XM_015781540.1	ncRNA:24   ACAUACUGUGGCAACUGAAAAA-CG   1   |||*||||||||||||||||||-|| targets:2892   UGUUUGACACCGUUGACUUUUUAGC   2916 Target Full Sequence	3.0	PREDICTED: Oryza sativa Japonica Group UMP-CMP kinase 2 (LOC4334909), transcript variant X2, mRNA	UMP-CMP kinase 2(LOC4334909)	coding protein	psRNATarget
XM_015781539.1	ncRNA:24   ACAUACUGUGGCAACUGAAAAA-CG   1   |||*||||||||||||||||||-|| targets:2874   UGUUUGACACCGUUGACUUUUUAGC   2898 Target Full Sequence	3.0	PREDICTED: Oryza sativa Japonica Group UMP-CMP kinase 2 (LOC4334909), transcript variant X1, mRNA	UMP-CMP kinase 2(LOC4334909)	coding protein	psRNATarget
XM_015770933.1	ncRNA:24   ACAUACUGUGGCAACUGAAAAA-CG   1   |||*||||||||||||||||||-|| targets:871   UGUUUGACACCGUUGACUUUUUAGC   895 Target Full Sequence	3.0	PREDICTED: Oryza sativa Japonica Group mediator of RNA polymerase II transcription subunit 2-like (LOC107277670), mRNA	mediator of RNA polymerase II transcription subunit 2-like(LOC107277670)	coding protein	psRNATarget
AK241906.1	ncRNA:24   ACAUACUGUGGCAACUGAAAAACG   1   |||||*||=||||||||||||||* targets:1249   UGUAUAACGCCGUUGACUUUUUGA   1272 Target Full Sequence	3.0	Oryza sativa Japonica Group cDNA, clone: J075049G22, full insert sequence	NA	coding protein	psRNATarget
AK288628.1	ncRNA:24   ACAUACUGUGGCAACUGAAAAACG   1   |||*||||||||||||||||||*| targets:2269   UGUUUGACACCGUUGACUUUUUAC   2292 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA, clone: J090054O04, full insert sequence	NA	coding protein	psRNATarget
AK106868.1	ncRNA:24   ACAUACUGUGGCAACUGAAAAACG   1   ||||*|||||||||||||*||||| targets:1876   UGUACGACACCGUUGACUGUUUGC   1899 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA clone:002-118-D05, full insert sequence	NA	coding protein	psRNATarget
XM_015791218.1	ncRNA:24   ACAUACUGUGGCAACUGAAAAACG   1   |||*||||||||||||||||||** targets:1768   UGUUUGACACCGUUGACUUUUUUA   1791 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group protein DETOXIFICATION 18 (LOC4342209), mRNA	protein DETOXIFICATION 18(LOC4342209)	coding protein	psRNATarget
CT828194.1	ncRNA:24   ACAUACUGUGGCAACUGAAAAACG   1   |||*||||||||||||||||||** targets:754   UGUUUGACACCGUUGACUUUUUAG   777 Target Full Sequence	2.5	Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA124P14, full insert sequence	NA	coding protein	psRNATarget
XM_015771489.1	ncRNA:24   ACAUACUGUGGCAACUGAAAAACG   1   |||*||||||||||||||||||** targets:1073   UGUUUGACACCGUUGACUUUUUAA   1096 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group isoflavone reductase-like protein (LOC107276778), transcript variant X1, mRNA	isoflavone reductase-like protein(LOC107276778)	coding protein	psRNATarget
XM_015771497.1	ncRNA:24   ACAUACUGUGGCAACUGAAAAACG   1   |||*||||||||||||||||||** targets:1070   UGUUUGACACCGUUGACUUUUUAA   1093 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group isoflavone reductase-like protein (LOC107276778), transcript variant X2, mRNA	isoflavone reductase-like protein(LOC107276778)	coding protein	psRNATarget
AK288622.1	ncRNA:24   ACAUACUGUGGCAACUGAAAAACG   1   ||||*|||==|||||||||||||* targets:2525   UGUACGACGUCGUUGACUUUUUGA   2548 Target Full Sequence	3.0	Oryza sativa Japonica Group cDNA, clone: J090054F13, full insert sequence	NA	coding protein	psRNATarget
XM_015783195.1	ncRNA:24   ACAUACUGUGGCAACUGAAAAACG   1   ||||*|||==|||||||||||||* targets:1516   UGUACGACGUCGUUGACUUUUUGA   1539 Target Full Sequence	3.0	PREDICTED: Oryza sativa Japonica Group FHA domain-containing protein DDL (LOC4339504), partial mRNA	FHA domain-containing protein DDL(LOC4339504)	coding protein	psRNATarget
XM_015783321.1	ncRNA:24   ACAUACUGUGGCAACUGAAAAACG   1   |**|||||||||||||||||||*= targets:1667   UAGAUGACACCGUUGACUUUUUCU   1690 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group anthocyanidin 5,3-O-glucosyltransferase (LOC4339395), mRNA	anthocyanidin 5,3-O-glucosyltransferase(LOC4339395)	coding protein	psRNATarget
AK060997.1	ncRNA:24   ACAUACUGUGGCAACUGAAAAACG   1   |**|||||||||||||||||||*= targets:1662   UAGAUGACACCGUUGACUUUUUCU   1685 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:006-203-E09, full insert sequence	NA	coding protein	psRNATarget
AK288409.1	ncRNA:24   ACAUACUGUGGCAACUGAAAAACG   1   |**|||||=|||||||||||||*| targets:578   UAGAUGACGCCGUUGACUUUUUUC   601 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J090030J15, full insert sequence	NA	coding protein	psRNATarget
AK069909.1	ncRNA:24   ACAUACUGUGGCAACUGAAAAACG   1   |**|||||=|||||||||||||*| targets:2209   UAGAUGACGCCGUUGACUUUUUCC   2232 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:J023037G05, full insert sequence	NA	coding protein	psRNATarget
AK241507.1	ncRNA:24   ACAUACUGUGGCAACUGAAAAACG   1   |**|*|||=||||||||||||||= targets:1546   UAGACGACGCCGUUGACUUUUUGU   1569 Target Full Sequence	2.0	Oryza sativa Japonica Group cDNA, clone: J065168E20, full insert sequence	NA	coding protein	psRNATarget