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BaseInfo

ncRNA ID	novel_osa_miR2921
Species	Oryza sativa
Class	miRNA
Genome position	Chr6:30971341-30971497 [+]
Reference genome	IRGSP-1.0
Source	SRR1555747;SRR4407953;SRR4407954;SRR4407955;SRR1556020
Length	24
Mature sequence(if miRNA)	134 - AGACAAAUGGUCAAACGUUGGACA - 157
Stem-loop(if miRNA)	--A                C             UU      -----------------CA     GAAAAUAUUUAUGGCAUGCUUA    CCAACGUUUGACCAUU GUUUUAUUCAAAA  UUUAUG                   AAUAU                      A    |||||||||||||||| |||||||||||||  ||||||                   |||||    GGUUGCAAACUGGUAA CAGAAUAAGUUUU  AAAUAC                   AUACU                      A ACA                A             UU      AUUAAUAGUAAAUAAAAUA     GAACUAAGCAAUAGCUUACAAG
Stem-loop sequence	ACCAACGUUUGACCAUUCGUUUUAUUCAAAAUUUUUAUGCAAAUAUGAAAAUAUUUAUGGCAUGCUUAAAGAACAUUCGAUAACGAAUCAAGUCAUAAUAAAAUAAAUGAUAAUUACAUAAAUUUUUUGAAUAAGACAAAUGGUCAAACGUUGGACA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
AK103228.1	ncRNA:24   ACAGGUUGCAAACUGGUAAACAGA   1   |||||||||||||||||||*|||| targets:2648   UGUCCAACGUUUGACCAUUCGUCU   2671 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA clone:J033123C21, full insert sequence	NA	coding protein	psRNATarget
AK242718.1	ncRNA:24   ACAGGUUGCAAACUGGUAAACAGA   1   |*|||||||||||||||||||||| targets:1878   UAUCCAACGUUUGACCAUUUGUCU   1901 Target Full Sequence	0.0	Oryza sativa Japonica Group cDNA, clone: J090043O09, full insert sequence	NA	coding protein	psRNATarget
CT829159.1	ncRNA:24   ACAGGUUGCAAACUGGUAAACAGA   1   |||||||||||||||||||*|||| targets:887   UGUCCAACGUUUGACCAUUCGUCU   910 Target Full Sequence	1.5	Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSN009P22, full insert sequence	NA	coding protein	psRNATarget
AK103201.1	ncRNA:24   ACAGGUUGCAAACUGGUAAACAGA   1   *||=|||||||||||||||*|||| targets:475   AGUUCAACGUUUGACCAUUCGUCU   498 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA clone:J033122B04, full insert sequence	NA	coding protein	psRNATarget
AK100631.1	ncRNA:24   ACAG---GUUGCAAACUGGUAAACAGA   1   |*||---|||||||||||=|||||||| targets:190   UUUCACACAACGUUUGACUAUUUGUCU   216 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA clone:J023109E08, full insert sequence	NA	coding protein	psRNATarget
CT828227.1	ncRNA:24   ACAGGUUGCAAACUGGUAAACAGA   1   |**=||||||||||||||||||=| targets:1124   UAAUCAACGUUUGACCAUUUGUUU   1147 Target Full Sequence	1.5	Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSN015L21, full insert sequence	NA	coding protein	psRNATarget
XM_015756907.1	ncRNA:24   ACAGGUUGCAAACUGGUAAACAGA   1   |*||=||||||||||||||*|||| targets:1621   UAUCUAACGUUUGACCAUUCGUCU   1644 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group probable inactive beta-glucosidase 33 (LOC4347547), mRNA	probable inactive beta-glucosidase 33(LOC4347547)	coding protein	psRNATarget
AK066336.1	ncRNA:24   ACAGGUUGCAAACUGGUAAACAGA   1   |*||=||||||||||||||*|||| targets:1629   UAUCUAACGUUUGACCAUUCGUCU   1652 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA clone:J013063O11, full insert sequence	NA	coding protein	psRNATarget
AK288382.1	ncRNA:24   ACAGGUUGCAAACUGGUAAACAGA   1   *||*=||=||||||||||||||=| targets:824   CGUAUAAUGUUUGACCAUUUGUUU   847 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J090026M23, full insert sequence	NA	coding protein	psRNATarget
XM_015782675.1	ncRNA:24   ACAGGUUGCAAACUGGUAAACAGA   1   |**==|||||||||||||||||=| targets:430   UUAUUAACGUUUGACCAUUUGUUU   453 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group E3 ubiquitin-protein ligase ATL41 (LOC9269942), mRNA	E3 ubiquitin-protein ligase ATL41(LOC9269942)	coding protein	psRNATarget
AK066289.1	ncRNA:24   ACAGGUUGCAAACUGGUAAACAGA   1   |**||||||||||||||*|||||| targets:1282   UAACCAACGUUUGACCACUUGUCU   1305 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA clone:J013063M01, full insert sequence	NA	coding protein	psRNATarget
XM_015778582.1	ncRNA:24   ACAGGUUGCAAACUGGUAAACAGA   1   |**||||||||||||||*|||||| targets:1280   UAACCAACGUUUGACCACUUGUCU   1303 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group methionine aminopeptidase 1B, chloroplastic (LOC4336948), mRNA	methionine aminopeptidase 1B, chloroplastic(LOC4336948)	coding protein	psRNATarget
XM_015785419.1	ncRNA:24   ACA------GGUUGCAAACUGGUAAACAGA   1   |||------||||||||||||||||*|||* targets:1758   UGUACGACGCCAACGUUUGACCAUUCGUCC   1787 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group ent-sandaracopimaradiene 3-hydroxylase (LOC4341343), mRNA	ent-sandaracopimaradiene 3-hydroxylase(LOC4341343)	coding protein	psRNATarget
AK287607.1	ncRNA:24   ACA------GGUUGCAAACUGGUAAACAGA   1   |||------||||||||||||||||*|||* targets:1753   UGUACGACGCCAACGUUUGACCAUUCGUCC   1782 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J065057L02, full insert sequence	NA	coding protein	psRNATarget
XM_015783321.1	ncRNA:24   ACAG-GU-UGCAAACUGGUAAACAGA   1   |*||-||-|=|||||||||||||||| targets:1686   UUUCUCACAUGUUUGACCAUUUGUCU   1711 Target Full Sequence	3.0	PREDICTED: Oryza sativa Japonica Group anthocyanidin 5,3-O-glucosyltransferase (LOC4339395), mRNA	anthocyanidin 5,3-O-glucosyltransferase(LOC4339395)	coding protein	psRNATarget
AF088220.1	ncRNA:24   ACA------GGUUGCAAACUGGUAAACAGA   1   |||------||||||||||||||||*|||* targets:938   UGUACGACGCCAACGUUUGACCAUUCGUCC   967 Target Full Sequence	2.5	Oryza sativa cytochrome P450-like sequence	NA	coding protein	psRNATarget
EF576393.1	ncRNA:24   ACA------GGUUGCAAACUGGUAAACAGA   1   |||------||||||||||||||||*|||* targets:375   UGUACGACGCCAACGUUUGACCAUUCGUCC   404 Target Full Sequence	2.5	Oryza sativa (indica cultivar-group) clone OSS-97-192-G1 kent-kaurene oxidase mRNA, partial cds	NA	coding protein	psRNATarget
AK288866.1	ncRNA:24   ACAGGUUGCAAACUGGUAAACAGA   1   |*||||||*|||||||||*||||| targets:388   UCUCCAACAUUUGACCAUCUGUCU   411 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J090078B06, full insert sequence	NA	coding protein	psRNATarget
AK289013.1	ncRNA:24   ACAGGUUGCAAACUGGUAAACAGA   1   ||--|||||||||||||*|||||| targets:3861   UG--CAACGUUUGACCACUUGUCU   3882 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA, clone: J090089J03, full insert sequence	NA	coding protein	psRNATarget
AK105698.1	ncRNA:24   ACAGGUUGCAAACUGGUAAACAGA   1   |*||*||||||||||||||*|||| targets:1117   UAUCAAACGUUUGACCAUUCGUCU   1140 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA clone:001-201-D03, full insert sequence	NA	coding protein	psRNATarget
AK065951.1	ncRNA:24   AC-AG-GUUGCAAACUGGUAAACAGA   1   ||-|=-||*=|||||||||||||||| targets:1302   UGCUUGCACUGUUUGACCAUUUGUCU   1327 Target Full Sequence	2.0	Oryza sativa Japonica Group cDNA clone:J013045C05, full insert sequence	NA	coding protein	psRNATarget
AK102561.1	ncRNA:24   ACAG---GUUGCAAACUGGUAAACAGA   1   |*||---|||=|||||||||||*|||| targets:2009   UUUCGCACAAUGUUUGACCAUUCGUCU   2035 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:J033097I22, full insert sequence	NA	coding protein	psRNATarget
AK288309.1	ncRNA:24   ACAGGUUGCAAACUGGUAAACAGA   1   |*||*||=|||||||||||*|||| targets:897   UCUCAAAUGUUUGACCAUUCGUCU   920 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J090020H08, full insert sequence	NA	coding protein	psRNATarget
XM_015793300.1	ncRNA:24   ACAGGUUGCAAACUGGUAAACAGA   1   |||***||||||||||=||||||| targets:1857   UGUGAUACGUUUGACCGUUUGUCU   1880 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group cytochrome P450 72A15 (LOC4324604), mRNA	cytochrome P450 72A15(LOC4324604)	coding protein	psRNATarget
AK067464.1	ncRNA:24   ACAGGU-UGCAAACUGGUAAACAGA   1   ||**||-|||||||||||||||||* targets:468   UGGACACACGUUUGACCAUUUGUCA   492 Target Full Sequence	3.0	Oryza sativa Japonica Group cDNA clone:J013099L16, full insert sequence	NA	coding protein	psRNATarget
AK288901.1	ncRNA:24   ACAGGUUGCAAACUGGUAAACAGA   1   |***||||*|||||||||||||=| targets:308   UUAACAACAUUUGACCAUUUGUUU   331 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J090080K21, full insert sequence	NA	coding protein	psRNATarget
XM_015776315.1	ncRNA:24   ACAGGUUGCAAACUGGUAAACAGA   1   |**|*|||||||||||*||||||| targets:721   UAACAAACGUUUGACCUUUUGUCU   744 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group calvin cycle protein CP12-1, chloroplastic (LOC4332603), mRNA	calvin cycle protein CP12-1, chloroplastic(LOC4332603)	coding protein	psRNATarget