Search result

BaseInfo

ncRNA ID	novel_osa_miR2919
Species	Oryza sativa
Class	miRNA
Genome position	Chr11:9165851-9165967 [-]
Reference genome	IRGSP-1.0
Source	SRR2040382;SRR2040389
Length	24
Mature sequence(if miRNA)	94 - AGAUAACCCCGAUUGUAUAACAUC - 117
Stem-loop(if miRNA)	--AG     C             A    --GCAAAAC          -----------      C     AUAAC CCGAUUGUAUAAC UCUA         UGCAAUAGGU           GUUUUC U     ||||| ||||||||||||| ||||         ||||||||||           ||||||     UAUUG GGUUAACAUAUUG AGGU         ACGUUAUUCA           CGAAGG A UUUA     A             A    AUCCUCUUA          AUACAUCUCAC      U
Stem-loop sequence	AGAUAACCCCGAUUGUAUAACAUCUAGCAAAACUGCAAUAGGUGUUUUCCUAUGGAAGCCACUCUACAUAACUUAUUGCAAUUCUCCUAUGGAAGUUAUACAAUUGGAGUUAUAUUU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
AK073103.1	ncRNA:24   CUAC--AAUAUGUUAGCCCCAAUAGA   1   ||*|--|||*|*|||||||||||||* targets:922   GAGGCAUUAGAGAAUCGGGGUUAUCG   947 Target Full Sequence	3.0	Oryza sativa Japonica Group cDNA clone:J033024G02, full insert sequence	NA	coding protein	psRNATarget
AK060569.1	ncRNA:24   CUAC--AAUAUGUUAGCCCCAAUAGA   1   ||*|--|||*|*|||||||||||||* targets:888   GAGGCAUUAGAGAAUCGGGGUUAUCG   913 Target Full Sequence	3.0	Oryza sativa Japonica Group cDNA clone:001-023-C01, full insert sequence	NA	coding protein	psRNATarget
XM_015789320.1	ncRNA:24   CUAC--AAUAUGUUAGCCCCAAUAGA   1   ||*|--|||*|*|||||||||||||* targets:953   GAGGCAUUAGAGAAUCGGGGUUAUCG   978 Target Full Sequence	3.0	PREDICTED: Oryza sativa Japonica Group nuclear pore complex protein NUP54 (LOC4342961), mRNA	nuclear pore complex protein NUP54(LOC4342961)	coding protein	psRNATarget