Search result

BaseInfo

ncRNA ID	novel_osa_miR2916
Species	Oryza sativa
Class	miRNA
Genome position	Chr9:1519831-1519929 [-]
Reference genome	IRGSP-1.0
Source	SRR2040382;SRR2040385;SRR2040395;SRR2040397;SRR2040401;SRR2040411;SRR2857730;SRR2857733;SRR3123651;SRR1738237;SRR1738240
Length	21
Mature sequence(if miRNA)	1 - UUAAUGUCGUAACAAGUUACU - 21
Stem-loop(if miRNA)	--        C                   C  C   -UA     UA   U   UAACUUGU ACGACAUUAGAAGUAAAUC AU GUG   GUAGA  GAC U   |||||||| ||||||||||||||||||| || |||   |||||  |||   AUUGAACA UGCUGUAAUUUUCAUUUAG UA CAC   CAUUU  UUG A UC        A                   A  A   CCC     --   U
Stem-loop sequence	UAACUUGUCACGACAUUAGAAGUAAAUCCAUCGUGUAGUAGAUAGACUUAUGUUUUUACCCCCACAAUAGAUUUACUUUUAAUGUCGUAACAAGUUACU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
HI404267.1	ncRNA:21   UCAUUGAACAAUGCUGUAAUU   1   ||||||||||*|||||||||= targets:68   AGUAACUUGUCACGACAUUAG   88 Target Full Sequence	2.5	Sequence 2392 from Patent EP2074227	NA	coding protein	psRNATarget
LQ236397.1	ncRNA:21   UCAUUGAACAAUGCUGUAAUU   1   ||||||||||*|||||||||= targets:68   AGUAACUUGUCACGACAUUAG   88 Target Full Sequence	2.5	Sequence 2392 from Patent EP2985353	NA	coding protein	psRNATarget
JB164728.1	ncRNA:21   UCAUUGAACAAUGCUGUAAUU   1   ||||||||||*|||||||||= targets:68   AGUAACUUGUCACGACAUUAG   88 Target Full Sequence	2.5	Sequence 2392 from Patent EP2559767	NA	coding protein	psRNATarget
AK242755.1	ncRNA:21   UCAUUGAACAAUGCUGUAAUU   1   |*||||||||*|||||||||| targets:878   AAUAACUUGUCACGACAUUAA   898 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA, clone: J090051A21, full insert sequence	NA	coding protein	psRNATarget
AK288185.1	ncRNA:21   UCAUUGAACAAUGCUGUAAUU   1   |*||||||||*|||||||||| targets:878   AAUAACUUGUCACGACAUUAA   898 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA, clone: J090006B06, full insert sequence	NA	coding protein	psRNATarget