Search result

BaseInfo

ncRNA ID	novel_osa_miR2912
Species	Oryza sativa
Class	miRNA
Genome position	Chr11:21899491-21899630 [-]
Reference genome	IRGSP-1.0
Source	SRR2040382;SRR2040388;SRR3123650;SRR1738239
Length	24
Mature sequence(if miRNA)	117 - AUUAGAACGAUGUGAUGAAAAAGU - 140
Stem-loop(if miRNA)	--                 A              UA             A           CUUCAAACUU   AUUAGAACGAUGUGAUG AAAAGUUGGAAGUU  UGUGUGUAGGAAA UUUUGAUGUGA          U   ||||||||||||||||| ||||||||||||||  ||||||||||||| |||||||||||   UAAUCUUGCUACACUGC UUUUUAAUCUUCAA  AUACACAUCCUUU AAAACUACGCU          C UU                 C              --             C           ACUUUUUCAA
Stem-loop sequence	AUUAGAACGAUGUGAUGAAAAAGUUGGAAGUUUAUGUGUGUAGGAAAAUUUUGAUGUGACUUCAAACUUUCAACUUUUUCAUCGCAUCAAAACUUUCCUACACAUAAACUUCUAAUUUUUCCGUCACAUCGUUCUAAUUU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_015775233.1	ncRNA:24   UGAAAAAGUAGUGUAGCAAGAUUA   1   |||||||||||||||||||||||| targets:393   ACUUUUUCAUCACAUCGUUCUAAU   416 Target Full Sequence	0.0	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4331473 (LOC4331473), transcript variant X5, mRNA	uncharacterized LOC4331473(LOC4331473)	coding protein	psRNATarget
XM_015775232.1	ncRNA:24   UGAAAAAGUAGUGUAGCAAGAUUA   1   |||||||||||||||||||||||| targets:388   ACUUUUUCAUCACAUCGUUCUAAU   411 Target Full Sequence	0.0	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4331473 (LOC4331473), transcript variant X4, mRNA	uncharacterized LOC4331473(LOC4331473)	coding protein	psRNATarget
AK109636.1	ncRNA:24   UGAAAAAGUAGUGUAGCAAGAUUA   1   ||||||||=||||||||||=|||| targets:940   ACUUUUUCGUCACAUCGUUUUAAU   963 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:002-138-D11, full insert sequence	NA	coding protein	psRNATarget
AK288631.1	ncRNA:24   UGAAAAAGUAGUGUAGCAAGAUUA   1   ||||||*||||||||||||||||| targets:3212   ACUUUUCCAUCACAUCGUUCUAAU   3235 Target Full Sequence	1.0	Oryza sativa Japonica Group cDNA, clone: J090055C12, full insert sequence	NA	coding protein	psRNATarget
AK120351.1	ncRNA:24   UGAAAAAGUAGUGUAGCAAGAUUA   1   ||||||*|||=||||||||||||| targets:3133   ACUUUUCCAUUACAUCGUUCUAAU   3156 Target Full Sequence	2.0	Oryza sativa Japonica Group cDNA clone:J013065M07, full insert sequence	NA	coding protein	psRNATarget
XM_015778471.1	ncRNA:24   UGAAAAAGUAGUGUAGCAAGAUUA   1   |=||||||||||||||||||*||| targets:3139   AUUUUUUCAUCACAUCGUUCCAAU   3162 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group glycine-rich cell wall structural protein (LOC9267389), mRNA	glycine-rich cell wall structural protein(LOC9267389)	coding protein	psRNATarget
XM_015764580.1	ncRNA:24   UGAAAAAGUAGUGUAGCAAGAUUA   1   ||||||*|=||||||||||||||| targets:13   ACUUUUCCGUCACAUCGUUCUAAU   36 Target Full Sequence	2.0	PREDICTED: Oryza sativa Japonica Group receptor-like protein 12 (LOC9272704), mRNA	receptor-like protein 12(LOC9272704)	coding protein	psRNATarget
AK109584.1	ncRNA:24   UGAAAAAGUAGUGUAGCAAGAUUA   1   ||||||*|=||||||||||||||| targets:690   ACUUUUCCGUCACAUCGUUCUAAU   713 Target Full Sequence	2.0	Oryza sativa Japonica Group cDNA clone:002-137-A10, full insert sequence	NA	coding protein	psRNATarget
AK106655.1	ncRNA:24   UGAAAAAGUAGUGUAGCAAGAUUA   1   ||||||*|=||||||||||||||| targets:723   ACUUUUCCGUCACAUCGUUCUAAU   746 Target Full Sequence	2.0	Oryza sativa Japonica Group cDNA clone:002-113-G04, full insert sequence	NA	coding protein	psRNATarget
AK288587.1	ncRNA:24   UGAAAAAGUAGUGUAGCAAGAUUA   1   ||||||*|||||||||||||*||| targets:4020   ACUUUUCCAUCACAUCGUUCCAAU   4043 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J090050A10, full insert sequence	NA	coding protein	psRNATarget
AK242132.1	ncRNA:24   UGAAAAAGUAGUGUAGCAAGAUUA   1   ||||||*|||||||||||||*||| targets:492   ACUUUUCCAUCACAUCGUUCCAAU   515 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J075149D21, full insert sequence	NA	coding protein	psRNATarget
AK106442.1	ncRNA:24   UGAAAAAGUAGUGUAGCAAGAUUA   1   ||||*|||=|||||||||||*||| targets:895   ACUUCUUCGUCACAUCGUUCCAAU   918 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:002-103-D11, full insert sequence	NA	coding protein	psRNATarget
XM_015791683.1	ncRNA:24   UGAAAAAGUAGUGUAGCAAGAUUA   1   ||*|||||=|||||||||||*||| targets:453   ACAUUUUCGUCACAUCGUUCCAAU   476 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4324388 (LOC4324388), mRNA	uncharacterized LOC4324388(LOC4324388)	coding protein	psRNATarget
AK111010.1	ncRNA:24   UGAAAAAGUAGUGUAGCAAGAUUA   1   |*||||||*|=||||||||||||| targets:816   AAUUUUUCUUUACAUCGUUCUAAU   839 Target Full Sequence	2.0	Oryza sativa Japonica Group cDNA clone:002-174-F09, full insert sequence	NA	coding protein	psRNATarget