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BaseInfo

ncRNA ID	novel_osa_miR2911
Species	Oryza sativa
Class	miRNA
Genome position	Chr7:3767510-3767615 [-]
Reference genome	IRGSP-1.0
Source	SRR2040382;SRR2040385;SRR2040386;SRR2040394;SRR2040399;SRR2040406
Length	24
Mature sequence(if miRNA)	1 - AAUGCGAGAAAUGUUAGAAUGACU - 24
Stem-loop(if miRNA)	--              UC A                                U   UCAUUCUAACAUUU  C CAUUUAUAUAGUUGUUAAUGAAUCUAGAUAUA A   ||||||||||||||  | ||||||||||||||||||||||||||||||||   AGUAAGAUUGUAAA  G GUAAGUAUAUUAAUAAUUACUUAGAUCUAUAU A UC              GA C                                A
Stem-loop sequence	UCAUUCUAACAUUUUCCACAUUUAUAUAGUUGUUAAUGAAUCUAGAUAUAUAAAUAUAUCUAGAUUCAUUAAUAAUUAUAUGAAUGCGAGAAAUGUUAGAAUGACU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
CT835116.1	ncRNA:24   UCAGUAAGAUUGUAAAGAGCGUAA   1   |||||||||||||||||||||||| targets:804   AGUCAUUCUAACAUUUCUCGCAUU   827 Target Full Sequence	0.0	Oryza sativa (indica cultivar-group) cDNA clone:OSIGCEA052M05, full insert sequence	NA	coding protein	psRNATarget
XM_015778842.1	ncRNA:24   UCAGUAAGAUUGUAAAGAGCGUAA   1   ||||||||||=|||||=||||||| targets:1121   AGUCAUUCUAGCAUUUUUCGCAUU   1144 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group putative RING-H2 finger protein ATL50 (LOC4336763), mRNA	putative RING-H2 finger protein ATL50(LOC4336763)	coding protein	psRNATarget
CT834624.1	ncRNA:24   UCAGUAAGAUUGUAAAGAGCGUAA   1   |||=||||||=|||||=||||||| targets:1082   AGUUAUUCUAGCAUUUUUCGCAUU   1105 Target Full Sequence	2.5	Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSA040F18, full insert sequence	NA	coding protein	psRNATarget
CT837528.1	ncRNA:24   UCAGUAAGAUUGUAAAGAGCGUAA   1   ||||||||||=||||||||*|||| targets:828   AGUCAUUCUAGCAUUUCUCACAUU   851 Target Full Sequence	2.5	Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSN037B21, full insert sequence	NA	coding protein	psRNATarget
AK240780.1	ncRNA:24   UCAGUAAGAUUGUAAAGAGCGUAA   1   ||||||||||=||||||*|||||| targets:927   AGUCAUUCUAGCAUUUCCCGCAUU   950 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J053075H13, full insert sequence	NA	coding protein	psRNATarget
AK120148.1	ncRNA:24   UCAGUAAGAUUGUAAAGAGCGUAA   1   ||||||||||=||||||||*|||| targets:463   AGUCAUUCUAGCAUUUCUCACAUU   486 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:J013029J05, full insert sequence	NA	coding protein	psRNATarget
XM_015764778.1	ncRNA:24   UCAGUAAGAUUGUAAAGAGCGUAA   1   ||||||||||=||||||||*|||| targets:3322   AGUCAUUCUAGCAUUUCUCACAUU   3345 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group putative disease resistance RPP13-like protein 3 (LOC4352543), transcript variant X3, mRNA	putative disease resistance RPP13-like protein 3(LOC4352543)	coding protein	psRNATarget
XM_015764776.1	ncRNA:24   UCAGUAAGAUUGUAAAGAGCGUAA   1   ||||||||||=||||||||*|||| targets:3327   AGUCAUUCUAGCAUUUCUCACAUU   3350 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group putative disease resistance RPP13-like protein 3 (LOC4352543), transcript variant X1, mRNA	putative disease resistance RPP13-like protein 3(LOC4352543)	coding protein	psRNATarget
AK288390.1	ncRNA:24   UCAGUAAGAUUGUAAAGAGCGUAA   1   ||||||||||=||||||||*|||| targets:679   AGUCAUUCUAGCAUUUCUCACAUU   702 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J090027G18, full insert sequence	NA	coding protein	psRNATarget
XM_015764777.1	ncRNA:24   UCAGUAAGAUUGUAAAGAGCGUAA   1   ||||||||||=||||||||*|||| targets:3563   AGUCAUUCUAGCAUUUCUCACAUU   3586 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group putative disease resistance RPP13-like protein 3 (LOC4352543), transcript variant X2, mRNA	putative disease resistance RPP13-like protein 3(LOC4352543)	coding protein	psRNATarget
XM_015764779.1	ncRNA:24   UCAGUAAGAUUGUAAAGAGCGUAA   1   ||||||||||=||||||||*|||| targets:4397   AGUCAUUCUAGCAUUUCUCACAUU   4420 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group putative disease resistance RPP13-like protein 3 (LOC4352543), transcript variant X4, mRNA	putative disease resistance RPP13-like protein 3(LOC4352543)	coding protein	psRNATarget
XM_015764968.1	ncRNA:24   UCAGUAAGAUUGUAAAGAGCGUAA   1   ||||||||||*||||||||*|||| targets:1145   AGUCAUUCUAUCAUUUCUCACAUU   1168 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC9269766 (LOC9269766), mRNA	uncharacterized LOC9269766(LOC9269766)	coding protein	psRNATarget
AK067512.1	ncRNA:24   UCAGUAAGAUUGUAAAGAGCGUAA   1   |*|||||||||||||||||*|||* targets:2266   AAUCAUUCUAACAUUUCUCACAUA   2289 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:J013109G08, full insert sequence	NA	coding protein	psRNATarget
AK072272.1	ncRNA:24   UCAGUAAGAUUGUAAAGAGCGUAA   1   |||*|||*|||||||||||*|||| targets:1827   AGUAAUUGUAACAUUUCUCACAUU   1850 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:J023004C21, full insert sequence	NA	coding protein	psRNATarget
XM_015759228.1	ncRNA:24   UCAGUAAGAUUGUAAAGAGCGUAA   1   |||*|||*|||||||||||*|||| targets:2087   AGUAAUUGUAACAUUUCUCACAUU   2110 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group MLO-like protein 9 (LOC4349258), mRNA	MLO-like protein 9(LOC4349258)	coding protein	psRNATarget