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BaseInfo

ncRNA ID novel_osa_miR2909
Species Oryza sativa
Class miRNA
Genome position Chr6:27809475-27809566 [+]
Reference genome IRGSP-1.0
Source SRR1555747;SRR1298758;SRR1298766;SRR1556020;SRR1300837
Length 21
Mature sequence(if miRNA) 72 - UAUAAAUGUGGAAAAUGCUAU - 92
Stem-loop(if miRNA) --AA     CU                              CAUAU
    CAUUU  CACAUUUAUAUUGAUAUUAAUGAAUCUAGA     A
    |||||  ||||||||||||||||||||||||||||||
    GUAAA  GUGUAAAUAUAACUAUAAUUAUUUAGAUUU     U
UAUC     AG                              AUCUA
Stem-loop sequence AACAUUUCUCACAUUUAUAUUGAUAUUAAUGAAUCUAGACAUAUAUAUCUAUUUAGAUUUAUUAAUAUCAAUAUAAAUGUGGAAAAUGCUAU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
AK318560.1
ncRNA:21   UAUCGUAAAAGGUGUAAAUAU   1
  |||||||||||||||||||||
targets:1130   AUAGCAUUUUCCACAUUUAUA   1150

0.0 Oryza sativa Japonica Group cDNA, clone: J075170N13, full insert sequence NA coding protein psRNATarget
XM_015785393.1
ncRNA:21   UAUCGUAAAAGGUGUAAAUAU   1
  |||||||||||||||||||||
targets:1568   AUAGCAUUUUCCACAUUUAUA   1588

0.0 PREDICTED: Oryza sativa Japonica Group phosphoglycerate mutase-like protein AT74H (LOC4339877), mRNA phosphoglycerate mutase-like protein AT74H(LOC4339877) coding protein psRNATarget
XM_015756761.1
ncRNA:21   UAUCGUAAAAGGUGUAAAUAU   1
  *||||||||||||=|||||||
targets:3358   CUAGCAUUUUCCAUAUUUAUA   3378

1.5 PREDICTED: Oryza sativa Japonica Group G-type lectin S-receptor-like serine/threonine-protein kinase At5g35370 (LOC4347249), mRNA G-type lectin S-receptor-like serine/threonine-protein kinase At5g35370(LOC4347249) coding protein psRNATarget
AK072906.1
ncRNA:21   UAUCGUAAAAGGUGUAAAUAU   1
  *||||||||||=|||||||||
targets:2728   CUAGCAUUUUCUACAUUUAUA   2748

1.5 Oryza sativa Japonica Group cDNA clone:J023147K18, full insert sequence NA coding protein psRNATarget
XM_015779859.1
ncRNA:21   UAUCGUAAAAGGUGUAAAUAU   1
  *||||||||||||=|||||||
targets:933   UUAGCAUUUUCCAUAUUUAUA   953

1.5 PREDICTED: Oryza sativa Japonica Group formin-like protein 3 (LOC4335722), mRNA formin-like protein 3(LOC4335722) coding protein psRNATarget
XM_015789040.1
ncRNA:21   UAUCGUAAAAGGUGUAAAUAU   1
  *||||||||||||||||*|||
targets:4724   CUAGCAUUUUCCACAUUCAUA   4744

1.5 PREDICTED: Oryza sativa Japonica Group uncharacterized LOC9266525 (LOC9266525), transcript variant X1, mRNA uncharacterized LOC9266525(LOC9266525) coding protein psRNATarget
AK121342.1
ncRNA:21   UAUCGUAAAAGGUGUAAAUAU   1
  *||||||||||||||||*|||
targets:4558   CUAGCAUUUUCCACAUUCAUA   4578

1.5 Oryza sativa Japonica Group cDNA clone:J023121A11, full insert sequence NA coding protein psRNATarget
AK102955.1
ncRNA:21   UAUCGUAAAAGGUGUAAAUAU   1
  *||||||||*|||||||||||
targets:776   CUAGCAUUUCCCACAUUUAUA   796

1.5 Oryza sativa Japonica Group cDNA clone:J033115G04, full insert sequence NA coding protein psRNATarget
XM_015773673.1
ncRNA:21   UAUCGUAAAAGGUGUAAAUAU   1
  *||||||||||||||||*|||
targets:1774   CUAGCAUUUUCCACAUUCAUA   1794

1.5 PREDICTED: Oryza sativa Japonica Group cytochrome P450 78A5 (LOC4333404), mRNA cytochrome P450 78A5(LOC4333404) coding protein psRNATarget
XM_015778179.1
ncRNA:21   UAUCGUAAAAGGUGUAAAUAU   1
  *||||||||||||||||*|||
targets:1635   CUAGCAUUUUCCACAUUCAUA   1655

1.5 PREDICTED: Oryza sativa Japonica Group methylthioribose kinase 2 (LOC107276080), mRNA methylthioribose kinase 2(LOC107276080) coding protein psRNATarget
XM_015767363.1
ncRNA:21   UAUCGUAAAAGGUGUAAAUAU   1
  *||||||||||||||||*|||
targets:1728   CUAGCAUUUUCCACAUUCAUA   1748

1.5 PREDICTED: Oryza sativa Japonica Group CAAX prenyl protease 1 homolog (LOC4330318), mRNA CAAX prenyl protease 1 homolog(LOC4330318) coding protein psRNATarget
XM_015768353.1
ncRNA:21   UAUCGUAAAAGGUGUAAAUAU   1
  *|||||||*||||||||||||
targets:1658   CUAGCAUUGUCCACAUUUAUA   1678

1.5 PREDICTED: Oryza sativa Japonica Group protein SRG1 (LOC4329022), transcript variant X2, mRNA protein SRG1(LOC4329022) coding protein psRNATarget
XM_015768352.1
ncRNA:21   UAUCGUAAAAGGUGUAAAUAU   1
  *|||||||*||||||||||||
targets:1646   CUAGCAUUGUCCACAUUUAUA   1666

1.5 PREDICTED: Oryza sativa Japonica Group protein SRG1 (LOC4329022), transcript variant X1, mRNA protein SRG1(LOC4329022) coding protein psRNATarget
AK102210.1
ncRNA:21   UAUCGUAAAAGGUGUAAAUAU   1
  *||||||||||||||||*|||
targets:1632   CUAGCAUUUUCCACAUUCAUA   1652

1.5 Oryza sativa Japonica Group cDNA clone:J033087I04, full insert sequence NA coding protein psRNATarget
XM_015768356.1
ncRNA:21   UAUCGUAAAAGGUGUAAAUAU   1
  *|||||||*||||||||||||
targets:1636   CUAGCAUUGUCCACAUUUAUA   1656

1.5 PREDICTED: Oryza sativa Japonica Group protein SRG1 (LOC4329022), transcript variant X5, mRNA protein SRG1(LOC4329022) coding protein psRNATarget
AK065581.1
ncRNA:21   UAUCGUAAAAGGUGUAAAUAU   1
  *|||||||*||||||||||||
targets:1608   CUAGCAUUGUCCACAUUUAUA   1628

1.5 Oryza sativa Japonica Group cDNA clone:J013034J09, full insert sequence NA coding protein psRNATarget
XM_015768355.1
ncRNA:21   UAUCGUAAAAGGUGUAAAUAU   1
  *|||||||*||||||||||||
targets:1602   CUAGCAUUGUCCACAUUUAUA   1622

1.5 PREDICTED: Oryza sativa Japonica Group protein SRG1 (LOC4329022), transcript variant X4, mRNA protein SRG1(LOC4329022) coding protein psRNATarget
XM_015768354.1
ncRNA:21   UAUCGUAAAAGGUGUAAAUAU   1
  *|||||||*||||||||||||
targets:1588   CUAGCAUUGUCCACAUUUAUA   1608

1.5 PREDICTED: Oryza sativa Japonica Group protein SRG1 (LOC4329022), transcript variant X3, mRNA protein SRG1(LOC4329022) coding protein psRNATarget
XM_015768357.1
ncRNA:21   UAUCGUAAAAGGUGUAAAUAU   1
  *|||||||*||||||||||||
targets:1552   CUAGCAUUGUCCACAUUUAUA   1572

1.5 PREDICTED: Oryza sativa Japonica Group protein SRG1 (LOC4329022), transcript variant X6, mRNA protein SRG1(LOC4329022) coding protein psRNATarget
XM_015777391.1
ncRNA:21   UAUCGUAAAAGGUGUAAAUAU   1
  *||||||||||||||||*|||
targets:1292   UUAGCAUUUUCCACAUUCAUA   1312

1.5 PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4333864 (LOC4333864), mRNA uncharacterized LOC4333864(LOC4333864) coding protein psRNATarget
XM_015764394.1
ncRNA:21   UAUCGUAAAAGGUGUAAAUAU   1
  *||||||||||||||||*|||
targets:1307   CUAGCAUUUUCCACAUUCAUA   1327

1.5 PREDICTED: Oryza sativa Japonica Group vesicle-associated membrane protein 721 (LOC4352920), mRNA vesicle-associated membrane protein 721(LOC4352920) coding protein psRNATarget
AK060498.1
ncRNA:21   UAUCGUAAAAGGUGUAAAUAU   1
  *||||||||||||||||*|||
targets:1267   CUAGCAUUUUCCACAUUCAUA   1287

1.5 Oryza sativa Japonica Group cDNA clone:001-017-D02, full insert sequence NA coding protein psRNATarget
CT832810.1
ncRNA:21   UAUCGUAAAAGGUGUAAAUAU   1
  *||||||||||||||||*|||
targets:1039   UUAGCAUUUUCCACAUUCAUA   1059

1.5 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA121K07, full insert sequence NA coding protein psRNATarget
AK066216.1
ncRNA:21   UAUCGUAAAAGGUGUAAAUAU   1
  *||||||||||||||||*|||
targets:1042   UUAGCAUUUUCCACAUUCAUA   1062

1.5 Oryza sativa Japonica Group cDNA clone:J013052J02, full insert sequence NA coding protein psRNATarget
CT833662.1
ncRNA:21   UAUCGUAAAAGGUGUAAAUAU   1
  *||||||||||||||||*|||
targets:1039   UUAGCAUUUUCCACAUUCAUA   1059

1.5 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSN049L15, full insert sequence NA coding protein psRNATarget
CT837839.1
ncRNA:21   UAUCGUAAAAGGUGUAAAUAU   1
  *||||||||*|||||||||||
targets:962   CUAGCAUUUCCCACAUUUAUA   982

1.5 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA105C15, full insert sequence NA coding protein psRNATarget
XM_015781389.1
ncRNA:21   UAUCGUAAAAGGUGUAAAUAU   1
  *|||=|||*||||||||||||
targets:752   CUAGUAUUGUCCACAUUUAUA   772

2.5 PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4336685 (LOC4336685), transcript variant X1, mRNA uncharacterized LOC4336685(LOC4336685) coding protein psRNATarget
XM_015781390.1
ncRNA:21   UAUCGUAAAAGGUGUAAAUAU   1
  *|||=|||*||||||||||||
targets:752   CUAGUAUUGUCCACAUUUAUA   772

2.5 PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4336685 (LOC4336685), transcript variant X2, mRNA uncharacterized LOC4336685(LOC4336685) coding protein psRNATarget
AK121202.1
ncRNA:21   UAUCGUAAAAGGUGUAAAUAU   1
  *|||=|||||||||||*||||
targets:1538   UUAGUAUUUUCCACAUAUAUA   1558

2.5 Oryza sativa Japonica Group cDNA clone:J023087K24, full insert sequence NA coding protein psRNATarget
XM_015764593.1
ncRNA:21   UAUCGUAAAAGGUGUAAAUAU   1
  *|||=|||||||||||*||||
targets:1538   UUAGUAUUUUCCACAUAUAUA   1558

2.5 PREDICTED: Oryza sativa Japonica Group UDP-glycosyltransferase 91C1 (LOC4352520), mRNA UDP-glycosyltransferase 91C1(LOC4352520) coding protein psRNATarget
AK060965.1
ncRNA:21   UAUCGUAAAAGGUGUAAAUAU   1
  *|||=|||||||||||*||||
targets:1538   UUAGUAUUUUCCACAUAUAUA   1558

2.5 Oryza sativa Japonica Group cDNA clone:006-202-B11, full insert sequence NA coding protein psRNATarget
CT835025.1
ncRNA:21   UAUCGUAAAAGGUGUAAAUAU   1
  *|||=||||||||||||*|||
targets:225   UUAGUAUUUUCCACAUUCAUA   245

2.5 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCPI029L19, full insert sequence NA coding protein psRNATarget
AK120281.1
ncRNA:21   UAUCGUAAAAGGUGUAAAUAU   1
  *|||||||||||||||*|||*
targets:1056   CUAGCAUUUUCCACAUCUAUC   1076

2.5 Oryza sativa Japonica Group cDNA clone:J013049I08, full insert sequence NA coding protein psRNATarget
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