Search result

BaseInfo

ncRNA ID	novel_osa_miR2907
Species	Oryza sativa
Class	miRNA
Genome position	Chr7:2746903-2746983 [+]
Reference genome	IRGSP-1.0
Source	SRR2040382;SRR2040383;SRR2040391;SRR2040392;SRR2040396;SRR2040398;SRR2040400;SRR2040404;SRR2040406;SRR2040407;SRR2040408;SRR2040409;SRR1612404
Length	21
Mature sequence(if miRNA)	1 - CGGAUGUGACAUAUUCUAGUA - 21
Stem-loop(if miRNA)	--         C           C       U    CAAA   CGGAUGUGA AUAUUCUAGUA UACAAAU UGAA    C   ||||||||| ||||||||||| ||||||| ||||    A   GCCUACAUU UAUAAGAUUAU AUGUUUA ACUU    G UG         A           C       U    AUAU
Stem-loop sequence	CGGAUGUGACAUAUUCUAGUACUACAAAUUUGAACAAACAGUAUAUUCAUAUUUGUACUAUUAGAAUAUAUUACAUCCGGU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
AK107145.1	ncRNA:21   AUGAUCUUAUACAGUGUAGGC   1   |||||||||||||=||||||| targets:1264   UACUAGAAUAUGUUACAUCCG   1284 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA clone:002-124-D07, full insert sequence	NA	coding protein	psRNATarget
XM_015782471.1	ncRNA:21   AUGAUCUUAUACAGUGUAGGC   1   |||||||||||||=||||||| targets:1304   UACUAGAAUAUGUUACAUCCG   1324 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4339433 (LOC4339433), mRNA	uncharacterized LOC4339433(LOC4339433)	coding protein	psRNATarget
AK287908.1	ncRNA:21   AUGAUCUUAUACAGUGUAGGC   1   |||||||||=||||||||||| targets:1266   UACUAGAAUGUGUCACAUCCG   1286 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA, clone: J065212K06, full insert sequence	NA	coding protein	psRNATarget
AK061182.1	ncRNA:21   AUGAUCUUAUACAGUGUAGGC   1   ||||||||||||||||||||* targets:887   UACUAGAAUAUGUCACAUCCA   907 Target Full Sequence	1.0	Oryza sativa Japonica Group cDNA clone:006-209-D09, full insert sequence	NA	coding protein	psRNATarget
XM_015759388.1	ncRNA:21   AUGAUCUUAUACAGUGUAGGC   1   ||||||||||||||||||||* targets:463   UACUAGAAUAUGUCACAUCCA   483 Target Full Sequence	1.0	PREDICTED: Oryza sativa Japonica Group ent-cassadiene C2-hydroxylase-like (LOC4348721), transcript variant X2, mRNA	ent-cassadiene C2-hydroxylase-like(LOC4348721)	coding protein	psRNATarget
AK288796.1	ncRNA:21   AUGAUCUUAUACAGUGUAGGC   1   ||||||||||||||||||||* targets:606   UACUAGAAUAUGUCACAUCCA   626 Target Full Sequence	1.0	Oryza sativa Japonica Group cDNA, clone: J090070F05, full insert sequence	NA	coding protein	psRNATarget
XM_015763486.1	ncRNA:21   AUGAUCUUAUACAGUGUAGGC   1   ||=|||||||||||=|||||| targets:1716   UAUUAGAAUAUGUCGCAUCCG   1736 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group purple acid phosphatase 2-like (LOC107278020), mRNA	purple acid phosphatase 2-like(LOC107278020)	coding protein	psRNATarget
XM_015787270.1	ncRNA:21   AUGAUCUUAUACAGUGUAGGC   1   ||||||=||=||||||||||| targets:5926   UACUAGGAUGUGUCACAUCCG   5946 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4341670 (LOC4341670), transcript variant X1, mRNA	uncharacterized LOC4341670(Os06g0647801)	coding protein	psRNATarget
JB164341.1	ncRNA:21   AUGAUCUUAUACAGUGUAGGC   1   ||=|||||||||||||||||* targets:70   UAUUAGAAUAUGUCACAUCCA   90 Target Full Sequence	2.0	Sequence 2005 from Patent EP2559767	NA	coding protein	psRNATarget
HI403880.1	ncRNA:21   AUGAUCUUAUACAGUGUAGGC   1   ||=|||||||||||||||||* targets:70   UAUUAGAAUAUGUCACAUCCA   90 Target Full Sequence	2.0	Sequence 2005 from Patent EP2074227	NA	coding protein	psRNATarget
LQ236010.1	ncRNA:21   AUGAUCUUAUACAGUGUAGGC   1   ||=|||||||||||||||||* targets:70   UAUUAGAAUAUGUCACAUCCA   90 Target Full Sequence	2.0	Sequence 2005 from Patent EP2985353	NA	coding protein	psRNATarget
XM_015769592.1	ncRNA:21   AUGAUCUUAUACAGUGUAGGC   1   ||=|||||||||||||||||* targets:402   UAUUAGAAUAUGUCACAUCCA   422 Target Full Sequence	2.0	PREDICTED: Oryza sativa Japonica Group translation machinery-associated protein 7-like (LOC107277315), mRNA	translation machinery-associated protein 7-like(LOC107277315)	coding protein	psRNATarget
XM_015775487.1	ncRNA:21   AUGAUCUUAUACAGUGUAGGC   1   |||||||||||||||||||=* targets:2621   UACUAGAAUAUGUCACAUCUA   2641 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group histone-lysine N-methyltransferase EZ3 (LOC4332612), transcript variant X2, mRNA	histone-lysine N-methyltransferase EZ3(LOC4332612)	coding protein	psRNATarget
XM_015775486.1	ncRNA:21   AUGAUCUUAUACAGUGUAGGC   1   |||||||||||||||||||=* targets:3192   UACUAGAAUAUGUCACAUCUA   3212 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group histone-lysine N-methyltransferase EZ3 (LOC4332612), transcript variant X1, mRNA	histone-lysine N-methyltransferase EZ3(LOC4332612)	coding protein	psRNATarget
AK288458.1	ncRNA:21   AUGAUCUUAUACAGUGUAGGC   1   |||||||||=||||||||||* targets:1371   UACUAGAAUGUGUCACAUCCA   1391 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J090035E13, full insert sequence	NA	coding protein	psRNATarget
JB164742.1	ncRNA:21   AUGAUCUUAUACAGUGUAGGC   1   *|||||||||||||||||||* targets:49   CACUAGAAUAUGUCACAUCCA   69 Target Full Sequence	1.0	Sequence 2406 from Patent EP2559767	NA	coding protein	psRNATarget
HI404281.1	ncRNA:21   AUGAUCUUAUACAGUGUAGGC   1   *|||||||||||||||||||* targets:49   CACUAGAAUAUGUCACAUCCA   69 Target Full Sequence	1.0	Sequence 2406 from Patent EP2074227	NA	coding protein	psRNATarget
LQ236411.1	ncRNA:21   AUGAUCUUAUACAGUGUAGGC   1   *|||||||||||||||||||* targets:49   CACUAGAAUAUGUCACAUCCA   69 Target Full Sequence	1.0	Sequence 2406 from Patent EP2985353	NA	coding protein	psRNATarget
HI403951.1	ncRNA:21   AUGAUCUUAUACAGUGUAGGC   1   ||||||||||*|||||||||* targets:76   UACUAGAAUACGUCACAUCCA   96 Target Full Sequence	2.5	Sequence 2076 from Patent EP2074227	NA	coding protein	psRNATarget
LQ236081.1	ncRNA:21   AUGAUCUUAUACAGUGUAGGC   1   ||||||||||*|||||||||* targets:76   UACUAGAAUACGUCACAUCCA   96 Target Full Sequence	2.5	Sequence 2076 from Patent EP2985353	NA	coding protein	psRNATarget
JB164412.1	ncRNA:21   AUGAUCUUAUACAGUGUAGGC   1   ||||||||||*|||||||||* targets:76   UACUAGAAUACGUCACAUCCA   96 Target Full Sequence	2.5	Sequence 2076 from Patent EP2559767	NA	coding protein	psRNATarget
XM_015778783.1	ncRNA:21   AUGAUCUUAUACAGUGUAGGC   1   ||||||||||||||*|||||* targets:32   UACUAGAAUAUGUCCCAUCCC   52 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group uncharacterized protein At2g24330-like (LOC107278684), mRNA	uncharacterized protein At2g24330-like(LOC107278684)	coding protein	psRNATarget
AK063369.1	ncRNA:21   AUGAUCUUAUACAGUGUAGGC   1   |||||||||||||||*||||* targets:1025   UACUAGAAUAUGUCAAAUCCA   1045 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:001-114-E01, full insert sequence	NA	coding protein	psRNATarget
XM_015794212.1	ncRNA:21   AUGAUCUUAUACAGUGUAGGC   1   |||||||||||||||*||||* targets:1136   UACUAGAAUAUGUCAAAUCCA   1156 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4325579 (LOC4325579), mRNA	uncharacterized LOC4325579(LOC4325579)	coding protein	psRNATarget
HI403967.1	ncRNA:21   AUGAUCUUAUACAGUGUAGGC   1   **||||||||||||||||||* targets:70   GUCUAGAAUAUGUCACAUCCA   90 Target Full Sequence	1.0	Sequence 2092 from Patent EP2074227	NA	coding protein	psRNATarget
LQ236097.1	ncRNA:21   AUGAUCUUAUACAGUGUAGGC   1   **||||||||||||||||||* targets:70   GUCUAGAAUAUGUCACAUCCA   90 Target Full Sequence	1.0	Sequence 2092 from Patent EP2985353	NA	coding protein	psRNATarget
JB164428.1	ncRNA:21   AUGAUCUUAUACAGUGUAGGC   1   **||||||||||||||||||* targets:70   GUCUAGAAUAUGUCACAUCCA   90 Target Full Sequence	1.0	Sequence 2092 from Patent EP2559767	NA	coding protein	psRNATarget