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BaseInfo

ncRNA ID	novel_osa_miR2906
Species	Oryza sativa
Class	miRNA
Genome position	Chr7:220592-220737 [+]
Reference genome	IRGSP-1.0
Source	SRR2040382;SRR2040405
Length	20
Mature sequence(if miRNA)	127 - UAAAGGACCGUAGAUUUGCU - 146
Stem-loop(if miRNA)	--   U     U      G        CCAU         CUUUUUCUAUUA       -A   C   U      C   CAA UUUAC GUUCUU AGGAGGUA    GAGGUAUCA            UAAAGUU  GUA CUC UAGUAC U   ||| ||||| |||||| ||||||||    |||||||||            |||||||  ||| ||| ||||||   GUU AGAUG CAGGAA UCCUCCAU    UUCCAUGGU            AUUUUAA  CAU GAG AUCAUG A UC   U     C      A        ----         -UUUUAAAUCAC       AC   A   U      G
Stem-loop sequence	CAAUUUUACUGUUCUUGAGGAGGUACCAUGAGGUAUCACUUUUUCUAUUAUAAAGUUAGUACCUCUUAGUACCUAGGUACUAUGAGAUACCAAAUUUUACACUAAAUUUUUGGUACCUUUACCUCCUAAAGGACCGUAGAUUUGCU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
AK105471.1	ncRNA:20   UCGUUUAGAUGCCAGGAAAU   1   |||||*||||||||||||*| targets:1226   AGCAAUUCUACGGUCCUUAA   1245 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:001-127-A01, full insert sequence	NA	coding protein	psRNATarget
XM_015765620.1	ncRNA:20   UCGUUUAGAUGCCAGGAAAU   1   |||||*||||||||||||*| targets:1234   AGCAAUUCUACGGUCCUUAA   1253 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group probably inactive leucine-rich repeat receptor-like protein kinase At5g48380 (LOC4324919), transcript variant X1, mRNA	probably inactive leucine-rich repeat receptor-like protein kinase At5g48380(LOC4324919)	coding protein	psRNATarget
XM_015765621.1	ncRNA:20   UCGUUUAGAUGCCAGGAAAU   1   |||||*||||||||||||*| targets:1252   AGCAAUUCUACGGUCCUUAA   1271 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group probably inactive leucine-rich repeat receptor-like protein kinase At5g48380 (LOC4324919), transcript variant X3, mRNA	probably inactive leucine-rich repeat receptor-like protein kinase At5g48380(LOC4324919)	coding protein	psRNATarget
AK072846.1	ncRNA:20   UCGUUUAGAUGCCAGGAAAU   1   |||||*||||||||||||*| targets:1686   AGCAAUUCUACGGUCCUUAA   1705 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:J023143D15, full insert sequence	NA	coding protein	psRNATarget
XM_015790029.1	ncRNA:20   UCGUUUAGAUGCCAGGAAAU   1   |||||*||||||||||||*| targets:2067   AGCAAUUCUACGGUCCUUAA   2086 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4342289 (LOC4342289), transcript variant X1, mRNA	uncharacterized LOC4342289(LOC4342289)	coding protein	psRNATarget
XM_015790030.1	ncRNA:20   UCGUUUAGAUGCCAGGAAAU   1   |||||*||||||||||||*| targets:2111   AGCAAUUCUACGGUCCUUAA   2130 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4342289 (LOC4342289), transcript variant X2, mRNA	uncharacterized LOC4342289(LOC4342289)	coding protein	psRNATarget
XM_015786027.1	ncRNA:20   UCGUUUAGAUGCCAGGAAAU   1   |||||*||||||||||||*| targets:4598   AGCAAUUCUACGGUCCUUGA   4617 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group ABC transporter C family member 8 (LOC9267441), mRNA	ABC transporter C family member 8(LOC9267441)	coding protein	psRNATarget