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BaseInfo

ncRNA ID novel_osa_miR2903
Species Oryza sativa
Class miRNA
Genome position Chr6:7230672-7230826 [+]
Reference genome IRGSP-1.0
Source SRR2040382;SRR2040383;SRR2040384;SRR2040385;SRR2040388;SRR2040390;SRR2040391;SRR2040399
Length 21
Mature sequence(if miRNA) 135 - UCGAGAUACUUUUUGUUGGAC - 155
Stem-loop(if miRNA) --             A         C  A      A      C    UG                     UG    GG
  CCAACAAAAAGUA CUCGAGGUA CG UACCUC CGGUAC AAAU  UUUCCGAUCGUUGGAUCUAGC  GGUG  U
  ||||||||||||| ||||||||| || |||||| |||||| ||||  |||||||||||||||||||||  ||||  U
  GGUUGUUUUUCAU GAGCUCCAU GC AUGGAG GCCAUG UUUA  AAAGGCUAGCAACCUAGAUUG  CUAC  G
CA             A         A  C      C      U    GU                     --    GG
Stem-loop sequence CCAACAAAAAGUAACUCGAGGUACCGAUACCUCACGGUACCAAAUUGUUUCCGAUCGUUGGAUCUAGCUGGGUGGGUUGGGCAUCGUUAGAUCCAACGAUCGGAAAUGAUUUUGUACCGCGAGGUACCGAUACCUCGAGAUACUUUUUGUUGGAC

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
AK063705.1
ncRNA:21   CAGGUUGUUUUUCAUAGAGCU   1
  |||||=|||||||||||||||
targets:484   GUCCAGCAAAAAGUAUCUCGA   504

1.0 Oryza sativa Japonica Group cDNA clone:001-119-H03, full insert sequence NA coding protein psRNATarget
EF626940.1
ncRNA:21   CAGGUUGUUUUUCAUAGAGCU   1
  |||||=|||||||||||||||
targets:990   GUCCAGCAAAAAGUAUCUCGA   1010

1.0 Oryza sativa (indica cultivar-group) WIP4 (WIP4) mRNA, complete cds NA coding protein psRNATarget
XM_015755547.1
ncRNA:21   CAGGUUGUUUUUCAUAGAGCU   1
  |||||=|||||||||||||||
targets:1465   GUCCAGCAAAAAGUAUCUCGA   1485

1.0 PREDICTED: Oryza sativa Japonica Group zinc finger protein WIP2 (LOC4347420), mRNA zinc finger protein WIP2(LOC4347420) coding protein psRNATarget
XM_015779655.1
ncRNA:21   CAGGUUGUUUUUCAUAGAGCU   1
  ||||||=||||||||||||||
targets:1464   GUCCAAUAAAAAGUAUCUCGA   1484

1.0 PREDICTED: Oryza sativa Japonica Group uncharacterized LOC107280684 (LOC107280684), transcript variant X1, mRNA uncharacterized LOC107280684(LOC107280684) coding protein psRNATarget
HI404119.1
ncRNA:21   CAGGUUGUUUUUCAUAGAGCU   1
  |||=||||=||||||||||||
targets:11   GUCUAACAGAAAGUAUCUCGA   31

2.5 Sequence 2244 from Patent EP2074227 NA coding protein psRNATarget
JB164580.1
ncRNA:21   CAGGUUGUUUUUCAUAGAGCU   1
  |||=||||=||||||||||||
targets:11   GUCUAACAGAAAGUAUCUCGA   31

2.5 Sequence 2244 from Patent EP2559767 NA coding protein psRNATarget
LQ236249.1
ncRNA:21   CAGGUUGUUUUUCAUAGAGCU   1
  |||=||||=||||||||||||
targets:11   GUCUAACAGAAAGUAUCUCGA   31

2.5 Sequence 2244 from Patent EP2985353 NA coding protein psRNATarget
XM_015755454.1
ncRNA:21   CAGGUUGUUUUU-CAUAGAGCU   1
  ||||||||||||-|||||||||
targets:994   GUCCAACAAAAAAGUAUCUCGA   1015

3.0 PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4346980 (LOC4346980), mRNA uncharacterized LOC4346980(LOC4346980) coding protein psRNATarget
AK241559.1
ncRNA:21   CAGGUUGUUUUU-CAUAGAGCU   1
  ||||||||||||-|||||||||
targets:781   GUCCAACAAAAAAGUAUCUCGA   802

3.0 Oryza sativa Japonica Group cDNA, clone: J065178L07, full insert sequence NA coding protein psRNATarget
LQ235663.1
ncRNA:21   CAGGUUGUUUUUCAUAGAGCU   1
  |||||||||||||||*|||||
targets:10   GUCCAACAAAAAGUACCUCGA   30

1.5 Sequence 1658 from Patent EP2985353 NA coding protein psRNATarget
HI403533.1
ncRNA:21   CAGGUUGUUUUUCAUAGAGCU   1
  |||||||||||||||*|||||
targets:10   GUCCAACAAAAAGUACCUCGA   30

1.5 Sequence 1658 from Patent EP2074227 NA coding protein psRNATarget
JB163994.1
ncRNA:21   CAGGUUGUUUUUCAUAGAGCU   1
  |||||||||||||||*|||||
targets:10   GUCCAACAAAAAGUACCUCGA   30

1.5 Sequence 1658 from Patent EP2559767 NA coding protein psRNATarget
JB164999.1
ncRNA:21   CAGGUUGUUUUUCAUAGAGCU   1
  ||||||||||||*||||||||
targets:11   GUCCAACAAAAAAUAUCUCGA   31

1.5 Sequence 2663 from Patent EP2559767 NA coding protein psRNATarget
LQ236668.1
ncRNA:21   CAGGUUGUUUUUCAUAGAGCU   1
  ||||||||||||*||||||||
targets:11   GUCCAACAAAAAAUAUCUCGA   31

1.5 Sequence 2663 from Patent EP2985353 NA coding protein psRNATarget
HI404538.1
ncRNA:21   CAGGUUGUUUUUCAUAGAGCU   1
  ||||||||||||*||||||||
targets:11   GUCCAACAAAAAAUAUCUCGA   31

1.5 Sequence 2663 from Patent EP2074227 NA coding protein psRNATarget
XM_015786123.1
ncRNA:21   CAGGUUGUUUUUCAUAGAGCU   1
  |||||||||||||||*|||||
targets:620   GUCCAACAAAAAGUAACUCGA   640

1.5 PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4340617 (LOC4340617), mRNA uncharacterized LOC4340617(LOC4340617) coding protein psRNATarget
AK100297.1
ncRNA:21   CAGGUUGUUUUUCAUAGAGCU   1
  ||||||||||||*||||||||
targets:1292   GUCCAACAAAAAUUAUCUCGA   1312

1.5 Oryza sativa Japonica Group cDNA clone:J023077B14, full insert sequence NA coding protein psRNATarget
XM_015793616.1
ncRNA:21   CAGGUUGUUUUUCAUAGAGCU   1
  ||||||||||||*||||||||
targets:1467   GUCCAACAAAAAUUAUCUCGA   1487

1.5 PREDICTED: Oryza sativa Japonica Group probable auxin efflux carrier component 4 (LOC4346116), mRNA probable auxin efflux carrier component 4(LOC4346116) coding protein psRNATarget
AK287529.1
ncRNA:21   CAGGUUGUUUUUCAUAGAGCU   1
  |||||||||||||||*|||||
targets:131   GUCCAACAAAAAGUAACUCGA   151

1.5 Oryza sativa Japonica Group cDNA, clone: J065001C03, full insert sequence NA coding protein psRNATarget
AK240791.1
ncRNA:21   CAGGUUGUUUUUCAUAGAGCU   1
  |||||||||||||||*|||||
targets:131   GUCCAACAAAAAGUAACUCGA   151

1.5 Oryza sativa Japonica Group cDNA, clone: J065001C03, full insert sequence NA coding protein psRNATarget
AK108234.1
ncRNA:21   CAGGUUGUUUUUCAUAGAGCU   1
  *||=|=|||||||||||||||
targets:420   AUCUAGCAAAAAGUAUCUCGA   440

2.0 Oryza sativa Japonica Group cDNA clone:002-140-G06, full insert sequence NA coding protein psRNATarget
AK103106.1
ncRNA:21   CAGGUUGUUUUUCAUAGAGCU   1
  ||||||=||||||||*|||||
targets:1437   GUCCAAUAAAAAGUACCUCGA   1457

2.5 Oryza sativa Japonica Group cDNA clone:J033118O22, full insert sequence NA coding protein psRNATarget
XM_015765802.1
ncRNA:21   CAGGUUGUUUUUCAUAGAGCU   1
  ||||||=||||||||*|||||
targets:1436   GUCCAAUAAAAAGUACCUCGA   1456

2.5 PREDICTED: Oryza sativa Japonica Group polygalacturonase (LOC4326679), mRNA polygalacturonase(LOC4326679) coding protein psRNATarget
XM_015790062.1
ncRNA:21   CAGGUUGUUUUUCAUAGAGCU   1
  ||=||||||||||||||*|||
targets:2278   GUUCAACAAAAAGUAUCCCGA   2298

2.5 PREDICTED: Oryza sativa Japonica Group L-type lectin-domain containing receptor kinase IV.1 (LOC9268564), mRNA L-type lectin-domain containing receptor kinase IV.1(LOC9268564) coding protein psRNATarget
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