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BaseInfo

ncRNA ID	novel_osa_miR2900
Species	Oryza sativa
Class	miRNA
Genome position	Chr1:42297029-42297085 [-]
Reference genome	IRGSP-1.0
Source	SRR1555747;SRR1555751;SRR4407777;SRR1556018;SRR1556020
Length	24
Mature sequence(if miRNA)	34 - AUUAUAGUAUAAUGAAUCUGGACA - 57
Stem-loop(if miRNA)	--AUUA             C    C          UAGUAUAAUGAAU UGGA AUAC       ||||||||||||| |||| |||U       AUUAUGUUACUUA ACCU UAUC UGUAUG             A    A
Stem-loop sequence	AUUAUAGUAUAAUGAAUCUGGACAUACUCUAUAUCCAAAUUCAUUGUAUUAGUAUGU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_015778240.1	ncRNA:24   ACAGGUCUAAGUAAUAUGAUAUUA   1   |||||||||||||||||||||||| targets:907   UGUCCAGAUUCAUUAUACUAUAAU   930 Target Full Sequence	0.0	PREDICTED: Oryza sativa Japonica Group pentatricopeptide repeat-containing protein At3g13880 (LOC9267950), mRNA	pentatricopeptide repeat-containing protein At3g13880(LOC9267950)	coding protein	psRNATarget
AK288796.1	ncRNA:24   ACAGGUCUAAGUAAUAUGAUAUUA   1   ||||||||||||||||||||*||| targets:591   UGUCCAGAUUCAUUAUACUAGAAU   614 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA, clone: J090070F05, full insert sequence	NA	coding protein	psRNATarget
AK288458.1	ncRNA:24   ACAGGUCUAAGUAAUAUGAUAUUA   1   |||=||||||||||||||||*||| targets:1356   UGUUCAGAUUCAUUAUACUAGAAU   1379 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA, clone: J090035E13, full insert sequence	NA	coding protein	psRNATarget
XM_015786406.1	ncRNA:24   ACAGGUCUAAGUAAUAUGAUAUUA   1   ||||*||||||=|||||||||||* targets:1969   UGUCGAGAUUCGUUAUACUAUAAC   1992 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group putative GDP-L-fucose synthase 2 (LOC4341698), mRNA	putative GDP-L-fucose synthase 2(LOC4341698)	coding protein	psRNATarget
AK064349.1	ncRNA:24   ACAGGUCUAAGUAAUAUGAUAUUA   1   ||*|||||||=||||||*|||||| targets:1736   UGCCCAGAUUUAUUAUAAUAUAAU   1759 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:002-108-A03, full insert sequence	NA	coding protein	psRNATarget
JB164275.1	ncRNA:24   ACAGGUCUAAGUAAUAUGAUAUUA   1   |||*=||||||||||||=|||||* targets:75   UGUAUAGAUUCAUUAUAUUAUAAA   98 Target Full Sequence	2.5	Sequence 1939 from Patent EP2559767	NA	coding protein	psRNATarget
LQ235944.1	ncRNA:24   ACAGGUCUAAGUAAUAUGAUAUUA   1   |||*=||||||||||||=|||||* targets:75   UGUAUAGAUUCAUUAUAUUAUAAA   98 Target Full Sequence	2.5	Sequence 1939 from Patent EP2985353	NA	coding protein	psRNATarget
HI403814.1	ncRNA:24   ACAGGUCUAAGUAAUAUGAUAUUA   1   |||*=||||||||||||=|||||* targets:75   UGUAUAGAUUCAUUAUAUUAUAAA   98 Target Full Sequence	2.5	Sequence 1939 from Patent EP2074227	NA	coding protein	psRNATarget
AK242470.1	ncRNA:24   ACAGGUCUAAGUAAUAUGAUAUUA   1   |*||=||||||||||*|||||||| targets:886   UUUCUAGAUUCAUUACACUAUAAU   909 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA, clone: J080302H11, full insert sequence	NA	coding protein	psRNATarget
XM_015794212.1	ncRNA:24   ACAGGUCUAAGUAAUAUGAUAUUA   1   **||=|||||||||||||||*||| targets:1121   AUUCUAGAUUCAUUAUACUAGAAU   1144 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4325579 (LOC4325579), mRNA	uncharacterized LOC4325579(LOC4325579)	coding protein	psRNATarget
AK063369.1	ncRNA:24   ACAGGUCUAAGUAAUAUGAUAUUA   1   **||=|||||||||||||||*||| targets:1010   AUUCUAGAUUCAUUAUACUAGAAU   1033 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA clone:001-114-E01, full insert sequence	NA	coding protein	psRNATarget
XM_015776130.1	ncRNA:24   ACAG--GUCUAAGUAAUAUGAUAUUA   1   *|||--||||*|||||=||||||||| targets:1957   GGUCAGCAGAGUCAUUGUACUAUAAU   1982 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group guanylate-binding protein 4 (LOC4334423), transcript variant X1, mRNA	guanylate-binding protein 4(LOC4334423)	coding protein	psRNATarget