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BaseInfo

ncRNA ID	novel_osa_miR2882
Species	Oryza sativa
Class	miRNA
Genome position	Chr6:17597459-17597602 [+]
Reference genome	IRGSP-1.0
Source	SRR1555747;SRR1556020
Length	23
Mature sequence(if miRNA)	122 - AGUCUUACAUUGUGAAACGGAUA - 144
Stem-loop(if miRNA)	--                 A        A         C  AC  A                CAAACACACA   UUCGUUUCACAAUGUAA ACUUUCUA UAUUGCACA AU  AU UAGAUGUUAAUGAAUC          U   ||||||||||||||||| |||||||| ||||||||| ||  || ||||||||||||||||   AGGCAAAGUGUUACAUU UGAAAGAU GUAACGUGU UA  UA AUCUACAAUUACUUAG          A AU                 C        C         A  AA  A                AUCUAUAUAU
Stem-loop sequence	UUCGUUUCACAAUGUAAAACUUUCUAAUAUUGCACACAUACAUAUAGAUGUUAAUGAAUCCAAACACACAUAUAUAUAUCUAGAUUCAUUAACAUCUAAAUAAAUAUGUGCAAUGCUAGAAAGUCUUACAUUGUGAAACGGAUA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
CT835628.1	ncRNA:23   AUAGGCAAAGUGUUACAUUCUGA   1   *|||||||||||||||||||||| targets:1149   CAUCCGUUUCACAAUGUAAGACU   1171 Target Full Sequence	0.0	Oryza sativa (indica cultivar-group) cDNA clone:OSIGCEA042P11, full insert sequence	NA	coding protein	psRNATarget
AK070836.1	ncRNA:23   AUAGGCAAAGUGUUACAUUCUGA   1   **||||||||||||||||||||| targets:1471   CCUCCGUUUCACAAUGUAAGACU   1493 Target Full Sequence	0.0	Oryza sativa Japonica Group cDNA clone:J023071O06, full insert sequence	NA	coding protein	psRNATarget
XM_015792390.1	ncRNA:23   AUAGGCAAAGUGUUACAUUCUGA   1   **||||||||||||||||||||| targets:1464   CCUCCGUUUCACAAUGUAAGACU   1486 Target Full Sequence	0.0	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4342294 (LOC4342294), transcript variant X1, mRNA	uncharacterized LOC4342294(LOC4342294)	coding protein	psRNATarget
AK106502.1	ncRNA:23   AUAGGCAAAGUGUUACAUUCUGA   1   **||||||||||||||||||||| targets:1433   CCUCCGUUUCACAAUGUAAGACU   1455 Target Full Sequence	0.0	Oryza sativa Japonica Group cDNA clone:002-105-F04, full insert sequence	NA	coding protein	psRNATarget
AK066283.1	ncRNA:23   AUAGGCAAAGUGUUACAUUCUGA   1   **||||||||||||||||||||| targets:930   CCUCCGUUUCACAAUGUAAGACU   952 Target Full Sequence	0.0	Oryza sativa Japonica Group cDNA clone:J013063D15, full insert sequence	NA	coding protein	psRNATarget
AK288932.1	ncRNA:23   AUAGGCAAAGUGUUACAUUCUGA   1   |*|||||||||=||||||||||| targets:2954   UCUCCGUUUCAUAAUGUAAGACU   2976 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA, clone: J090082H22, full insert sequence	NA	coding protein	psRNATarget
XM_015784092.1	ncRNA:23   AUAGGCAAAGUGUUACAUUCUGA   1   |*|||||||||=||||||||||| targets:1671   UCUCCGUUUCAUAAUGUAAGACU   1693 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group serine carboxypeptidase-like 50 (LOC4339736), mRNA	serine carboxypeptidase-like 50(LOC4339736)	coding protein	psRNATarget
AK070825.1	ncRNA:23   AUAGGCAAAGUGUUACAUUCUGA   1   |*|||||||||=||||||||||| targets:1501   UCUCCGUUUCAUAAUGUAAGACU   1523 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA clone:J023064P05, full insert sequence	NA	coding protein	psRNATarget
XM_015769168.1	ncRNA:23   AUAGGCAAAGUGUUACAUUCUGA   1   **|||||||||=||||||||||| targets:2655   CCUCCGUUUCAUAAUGUAAGACU   2677 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group probable splicing factor 3A subunit 1 (LOC4328860), transcript variant X3, mRNA	probable splicing factor 3A subunit 1(LOC4328860)	coding protein	psRNATarget
AK067660.1	ncRNA:23   AUAGGCAAAGUGUUACAUUCUGA   1   **|=||||||||||||||||||| targets:2689   CCUUCGUUUCACAAUGUAAGACU   2711 Target Full Sequence	0.0	Oryza sativa Japonica Group cDNA clone:J013116C06, full insert sequence	NA	coding protein	psRNATarget
AK318573.1	ncRNA:23   AUAGGCAAAGUGUUACAUUCUGA   1   **|||||||||=||||||||||| targets:289   CCUCCGUUUCAUAAUGUAAGACU   311 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA, clone: J090044A16, full insert sequence	NA	coding protein	psRNATarget
XM_015763601.1	ncRNA:23   AUAGGCAAAGUGUUACAUUCUGA   1   **|||||||=||||||||||||| targets:1766   CCUCCGUUUUACAAUGUAAGACU   1788 Target Full Sequence	1.0	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC9270455 (LOC9270455), transcript variant X6, mRNA	uncharacterized LOC9270455(LOC9270455)	coding protein	psRNATarget
AK068294.1	ncRNA:23   AUA--------GGCAAAGUGUUACAUUCUGA   1   |||--------|||||||||||||||||||| targets:1792   UAUUACUCCCCCCGUUUCACAAUGUAAGACU   1822 Target Full Sequence	0.0	Oryza sativa Japonica Group cDNA clone:J013148J04, full insert sequence	NA	coding protein	psRNATarget
XM_015778351.1	ncRNA:23   AUAGGCAAAGUGUUACAUUCUGA   1   *||||||||||||||*||||||| targets:619   CAUCCGUUUCACAAUAUAAGACU   641 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group UPF0426 protein At1g28150, chloroplastic (LOC4336466), transcript variant X3, mRNA	UPF0426 protein At1g28150, chloroplastic(LOC4336466)	coding protein	psRNATarget
AK065957.1	ncRNA:23   AUAGGCAAAGUGUUACAUUCUGA   1   *||||||||||||||*||||||| targets:561   CAUCCGUUUCACAAUAUAAGACU   583 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA clone:J013044D08, full insert sequence	NA	coding protein	psRNATarget
AK120323.1	ncRNA:23   AUAGGCAAAGUGUUACAUUCUGA   1   **||||||||||||||||||||* targets:4498   CCUCCGUUUCACAAUGUAAGACA   4520 Target Full Sequence	1.0	Oryza sativa Japonica Group cDNA clone:J013057K06, full insert sequence	NA	coding protein	psRNATarget
AK059715.1	ncRNA:23   AUAGGCAAAGUGUUACAUUCUGA   1   ***|||||||||||||||||||| targets:13   CCCCCGUUUCACAAUGUAAGACU   35 Target Full Sequence	0.0	Oryza sativa Japonica Group cDNA clone:001-032-F10, full insert sequence	NA	coding protein	psRNATarget
AK288617.1	ncRNA:23   AUAGGCAAAGUGUUACAUUCUGA   1   **||=||||||=||||||||||| targets:1109   CCUCUGUUUCAUAAUGUAAGACU   1131 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J090054B15, full insert sequence	NA	coding protein	psRNATarget
AK242153.1	ncRNA:23   AUAGGCAAAGUGUUACAUUCUGA   1   **||=||||||||||||||||=| targets:1015   CCUCUGUUUCACAAUGUAAGAUU   1037 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J075153O10, full insert sequence	NA	coding protein	psRNATarget
AK072517.1	ncRNA:23   AU--AGGCAAAGUGUUACAUUCUGA   1   ||--||||||||||||||*|||||| targets:1303   UACCUCCGUUUCACAAUGCAAGACU   1327 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA clone:J023133J02, full insert sequence	NA	coding protein	psRNATarget
XM_015795868.1	ncRNA:23   AUAGGCAAA-GUGUUACAUUCUGA   1   **|||||||-|||||||||||||| targets:1142   CCUCCGUUUUCACAAUGUAAGACU   1165 Target Full Sequence	2.0	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC107277671 (LOC107277671), mRNA	uncharacterized LOC107277671(LOC107277671)	coding protein	psRNATarget
XM_015782334.1	ncRNA:23   AUAGGCAAAGUGUUACAUUCUGA   1   *=|||||||||||||||||*||| targets:926   CGUCCGUUUCACAAUGUAAAACU   948 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group iron-sulfur cluster assembly scaffold protein IscU (LOC4339646), mRNA	iron-sulfur cluster assembly scaffold protein IscU(LOC4339646)	coding protein	psRNATarget
AK069724.1	ncRNA:23   AUAGGCAAAGUGUUACAUUCUGA   1   *=|||||||||||||||||*||| targets:935   CGUCCGUUUCACAAUGUAAAACU   957 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA clone:J023030J11, full insert sequence	NA	coding protein	psRNATarget
XM_015766546.1	ncRNA:23   AUAGGCAAAGUGUUACAUUCUGA   1   **|||||||||||*||||||||| targets:4875   CCUCCGUUUCACAUUGUAAGACU   4897 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group probable LRR receptor-like serine/threonine-protein kinase IRK (LOC4327614), transcript variant X1, mRNA	probable LRR receptor-like serine/threonine-protein kinase IRK(LOC4327614)	coding protein	psRNATarget
XM_015766550.1	ncRNA:23   AUAGGCAAAGUGUUACAUUCUGA   1   **|||||||||||*||||||||| targets:4793   CCUCCGUUUCACAUUGUAAGACU   4815 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group probable LRR receptor-like serine/threonine-protein kinase IRK (LOC4327614), transcript variant X4, mRNA	probable LRR receptor-like serine/threonine-protein kinase IRK(LOC4327614)	coding protein	psRNATarget
XM_015766551.1	ncRNA:23   AUAGGCAAAGUGUUACAUUCUGA   1   **|||||||||||*||||||||| targets:4708   CCUCCGUUUCACAUUGUAAGACU   4730 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group probable LRR receptor-like serine/threonine-protein kinase IRK (LOC4327614), transcript variant X5, mRNA	probable LRR receptor-like serine/threonine-protein kinase IRK(LOC4327614)	coding protein	psRNATarget
XM_015766548.1	ncRNA:23   AUAGGCAAAGUGUUACAUUCUGA   1   **|||||||||||*||||||||| targets:4671   CCUCCGUUUCACAUUGUAAGACU   4693 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group probable LRR receptor-like serine/threonine-protein kinase IRK (LOC4327614), transcript variant X2, mRNA	probable LRR receptor-like serine/threonine-protein kinase IRK(LOC4327614)	coding protein	psRNATarget
XM_015766549.1	ncRNA:23   AUAGGCAAAGUGUUACAUUCUGA   1   **|||||||||||*||||||||| targets:4509   CCUCCGUUUCACAUUGUAAGACU   4531 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group probable LRR receptor-like serine/threonine-protein kinase IRK (LOC4327614), transcript variant X3, mRNA	probable LRR receptor-like serine/threonine-protein kinase IRK(LOC4327614)	coding protein	psRNATarget
XM_015766552.1	ncRNA:23   AUAGGCAAAGUGUUACAUUCUGA   1   **|||||||||||*||||||||| targets:3895   CCUCCGUUUCACAUUGUAAGACU   3917 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group probable LRR receptor-like serine/threonine-protein kinase IRK (LOC4327614), transcript variant X6, mRNA	probable LRR receptor-like serine/threonine-protein kinase IRK(LOC4327614)	coding protein	psRNATarget
XM_015766553.1	ncRNA:23   AUAGGCAAAGUGUUACAUUCUGA   1   **|||||||||||*||||||||| targets:2705   CCUCCGUUUCACAUUGUAAGACU   2727 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group probable LRR receptor-like serine/threonine-protein kinase IRK (LOC4327614), transcript variant X7, mRNA	probable LRR receptor-like serine/threonine-protein kinase IRK(LOC4327614)	coding protein	psRNATarget
XM_015766554.1	ncRNA:23   AUAGGCAAAGUGUUACAUUCUGA   1   **|||||||||||*||||||||| targets:2501   CCUCCGUUUCACAUUGUAAGACU   2523 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group probable LRR receptor-like serine/threonine-protein kinase IRK (LOC4327614), transcript variant X8, mRNA	probable LRR receptor-like serine/threonine-protein kinase IRK(LOC4327614)	coding protein	psRNATarget
XM_015766555.1	ncRNA:23   AUAGGCAAAGUGUUACAUUCUGA   1   **|||||||||||*||||||||| targets:2411   CCUCCGUUUCACAUUGUAAGACU   2433 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group probable LRR receptor-like serine/threonine-protein kinase IRK (LOC4327614), transcript variant X9, mRNA	probable LRR receptor-like serine/threonine-protein kinase IRK(LOC4327614)	coding protein	psRNATarget
AK072999.1	ncRNA:23   AUAGGCAAAGUGUUACAUUCUGA   1   **|||*||||||||||||||||| targets:1515   CCUCCAUUUCACAAUGUAAGACU   1537 Target Full Sequence	1.0	Oryza sativa Japonica Group cDNA clone:J023149N01, full insert sequence	NA	coding protein	psRNATarget
AK119344.1	ncRNA:23   AUAGGCAAAGUGUUACAUUCUGA   1   **|||*|||||||=||||||||| targets:1146   CCUCCAUUUCACAGUGUAAGACU   1168 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:001-131-E01, full insert sequence	NA	coding protein	psRNATarget
AK071562.1	ncRNA:23   AUAGGCAAAGUGUUACAUUCUGA   1   **||=||||||||||*||||||| targets:1271   CCUCUGUUUCACAAUAUAAGACU   1293 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:J023102P22, full insert sequence	NA	coding protein	psRNATarget
XM_015786027.1	ncRNA:23   AUAGGCAAAGUGUUACAUUCUGA   1   **|||||||||||||*||||||* targets:4260   CCUCCGUUUCACAAUAUAAGACC   4282 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group ABC transporter C family member 8 (LOC9267441), mRNA	ABC transporter C family member 8(LOC9267441)	coding protein	psRNATarget
XM_015761417.1	ncRNA:23   AUAGGCAAAGUGUUACAUUCUGA   1   **||||||||||||||||||*|* targets:311   CCUCCGUUUCACAAUGUAAGUCG   333 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC9270662 (LOC9270662), transcript variant X2, mRNA	uncharacterized LOC9270662(LOC9270662)	coding protein	psRNATarget
XM_015774902.1	ncRNA:23   AUAGGCAAAGUGUUACAUUCUGA   1   **||||||||||||||||||*|* targets:1992   CCUCCGUUUCACAAUGUAAGUCA   2014 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group beclin-1-like protein (LOC4333557), mRNA	beclin-1-like protein(LOC4333557)	coding protein	psRNATarget
AK099664.1	ncRNA:23   AUAGGCAAAGUGUUACAUUCUGA   1   **||||||||||||||||||*|* targets:1933   CCUCCGUUUCACAAUGUAAGUCA   1955 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:J013066P07, full insert sequence	NA	coding protein	psRNATarget
AK066359.1	ncRNA:23   AUAGGCAAAGUGUUACAUUCUGA   1   **||||||||||||||||||*|* targets:1933   CCUCCGUUUCACAAUGUAAGUCA   1955 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:J013066O06, full insert sequence	NA	coding protein	psRNATarget
CT833624.1	ncRNA:23   AUAGGCAAAGUGUUACAUUCUGA   1   **|||*|||||*||||||||||| targets:1022   CCUCCAUUUCAGAAUGUAAGACU   1044 Target Full Sequence	2.5	Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSN046D04, full insert sequence	NA	coding protein	psRNATarget