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BaseInfo

ncRNA ID	novel_osa_miR2881
Species	Oryza sativa
Class	miRNA
Genome position	Chr4:27070515-27070628 [+]
Reference genome	IRGSP-1.0
Source	SRR2040382
Length	21
Mature sequence(if miRNA)	1 - CGAGAACGACGAGGAGGAGGA - 21
Stem-loop(if miRNA)	--      C        GGA      --G   GA  AUGACGAUGAGGAGGCGGCGGCG   CGAGAA GACGAGGA   GGAGGA   GCC  CG                       G   |||||| ||||||||   ||||||   |||  ||                       C   GCUUUU UUGUUUUU   CCUUUU   AAG  UU                       G GU      -        AGG      UUU   --  UUUUAACUUUUGGAUCUUAGGCC
Stem-loop sequence	CGAGAACGACGAGGAGGAGGAGGAGGCCGACGAUGACGAUGAGGAGGCGGCGGCGGCGCCGGAUUCUAGGUUUUCAAUUUUUUGAAUUUUUUUCCGGAUUUUUGUUUUUUCGUG

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
CT830354.1	ncRNA:21   AGGAGGAGGAGCAGCAAGAGC   1   ||||||||||||||||*|||| targets:94   UCCUCCUCCUCGUCGUCCUCG   114 Target Full Sequence	1.5	Oryza sativa (indica cultivar-group) cDNA clone:OSIGCEA044K17, full insert sequence	NA	coding protein	psRNATarget
XM_015780916.1	ncRNA:21   AGGAGGAGGAGCAGCAAGAGC   1   *|||||||||||||||*|||| targets:209   ACCUCCUCCUCGUCGUCCUCG   229 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group DExH-box ATP-dependent RNA helicase DExH7, chloroplastic (LOC9267691), transcript variant X1, mRNA	DExH-box ATP-dependent RNA helicase DExH7, chloroplastic(LOC9267691)	coding protein	psRNATarget
XM_015780918.1	ncRNA:21   AGGAGGAGGAGCAGCAAGAGC   1   *|||||||||||||||*|||| targets:209   ACCUCCUCCUCGUCGUCCUCG   229 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group DExH-box ATP-dependent RNA helicase DExH7, chloroplastic (LOC9267691), transcript variant X3, mRNA	DExH-box ATP-dependent RNA helicase DExH7, chloroplastic(LOC9267691)	coding protein	psRNATarget
XM_015780917.1	ncRNA:21   AGGAGGAGGAGCAGCAAGAGC   1   *|||||||||||||||*|||| targets:209   ACCUCCUCCUCGUCGUCCUCG   229 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group DExH-box ATP-dependent RNA helicase DExH7, chloroplastic (LOC9267691), transcript variant X2, mRNA	DExH-box ATP-dependent RNA helicase DExH7, chloroplastic(LOC9267691)	coding protein	psRNATarget
XM_015780215.1	ncRNA:21   AGGAGGAGGAGCAGCAAGAGC   1   |||||||||||||||*||||* targets:262   UCCUCCUCCUCGUCGCUCUCU   282 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group probable potassium transporter 11 (LOC4336979), mRNA	probable potassium transporter 11(LOC4336979)	coding protein	psRNATarget
AK072123.1	ncRNA:21   AGGAGGAGGAGCAGCAAGAGC   1   |||||||||||||||*||||* targets:254   UCCUCCUCCUCGUCGCUCUCU   274 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:J013122K08, full insert sequence	NA	coding protein	psRNATarget
XM_015778891.1	ncRNA:21   AGGAGGAGGAGCAGCAAGAGC   1   *|||||||||||||||*|||| targets:106   GCCUCCUCCUCGUCGUGCUCG   126 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group probable inactive receptor kinase At5g67200 (LOC4337221), mRNA	probable inactive receptor kinase At5g67200(LOC4337221)	coding protein	psRNATarget
AK100096.1	ncRNA:21   AGGAGGAGGAGCAGCAAGAGC   1   *|||||||||||||||*|||| targets:113   GCCUCCUCCUCGUCGUGCUCG   133 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA clone:J023004B22, full insert sequence	NA	coding protein	psRNATarget
AK119889.1	ncRNA:21   AGGAGGAGGAGCAGCAAGAGC   1   *|||||||||||||||*|||| targets:46   GCCUCCUCCUCGUCGUGCUCG   66 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA clone:002-180-A02, full insert sequence	NA	coding protein	psRNATarget
AK120146.1	ncRNA:21   AGGAGGAGGAGCAGCAAGAGC   1   *|||||||||||||||*|||| targets:16   GCCUCCUCCUCGUCGUGCUCG   36 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA clone:J013028L17, full insert sequence	NA	coding protein	psRNATarget
XM_015763604.1	ncRNA:21   AGGAGGAGGAGCAGCAAGAGC   1   |||||||||*||||||||||* targets:75   UCCUCCUCCACGUCGUUCUCU   95 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group asparagine--tRNA ligase, cytoplasmic 2 (LOC4352065), mRNA	asparagine--tRNA ligase, cytoplasmic 2(LOC4352065)	coding protein	psRNATarget
XM_015775297.1	ncRNA:21   AGGAGGAGGAGCAGCAAGAGC   1   ||||||||||||||||*|||* targets:942   UCCUCCUCCUCGUCGUCCUCC   962 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group aminotransferase ALD1 homolog (LOC4331930), mRNA	aminotransferase ALD1 homolog(LOC4331930)	coding protein	psRNATarget
XM_015795724.1	ncRNA:21   AGGAGGAGGAGCAGCAAGAGC   1   ||||||||||||||||*|||* targets:139   UCCUCCUCCUCGUCGUCCUCC   159 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group plant UBX domain-containing protein 2 (LOC4347001), mRNA	plant UBX domain-containing protein 2(LOC4347001)	coding protein	psRNATarget
AK102565.1	ncRNA:21   AGGAGGAGGAGCAGCAAGAGC   1   ||||||||||||||||*|||* targets:260   UCCUCCUCCUCGUCGUCCUCC   280 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:J033097K17, full insert sequence	NA	coding protein	psRNATarget
XM_015765012.1	ncRNA:21   AGGAGGAGGAGCAGCAAGAGC   1   ||||||||||||||||*|||* targets:255   UCCUCCUCCUCGUCGUCCUCC   275 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group chaperone protein dnaJ 50 (LOC4351914), transcript variant X1, mRNA	chaperone protein dnaJ 50(LOC4351914)	coding protein	psRNATarget
XM_015765013.1	ncRNA:21   AGGAGGAGGAGCAGCAAGAGC   1   ||||||||||||||||*|||* targets:254   UCCUCCUCCUCGUCGUCCUCC   274 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group chaperone protein dnaJ 50 (LOC4351914), transcript variant X2, mRNA	chaperone protein dnaJ 50(LOC4351914)	coding protein	psRNATarget
AY338236.1	ncRNA:21   AGGAGGAGGAGCAGCAAGAGC   1   ||||||||||||||||*|||* targets:760   UCCUCCUCCUCGUCGUCCUCC   780 Target Full Sequence	2.5	Oryza sativa (japonica cultivar-group) putative aminotransferase ALD1 (ALD1) mRNA, complete cds	NA	coding protein	psRNATarget
CT834448.1	ncRNA:21   AGGAGGAGGAGCAGCAAGAGC   1   |||||||||||||||*||||* targets:244   UCCUCCUCCUCGUCGCUCUCU   264 Target Full Sequence	2.5	Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA106H17, full insert sequence	NA	coding protein	psRNATarget
CT830441.1	ncRNA:21   AGGAGGAGGAGCAGCAAGAGC   1   ||||||||||||||||*|||* targets:176   UCCUCCUCCUCGUCGUCCUCC   196 Target Full Sequence	2.5	Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA118J10, full insert sequence	NA	coding protein	psRNATarget
XM_015783372.1	ncRNA:21   AGGAGGAGGAGCAGCAAGAGC   1   ||||||||||||||||*|||* targets:462   UCCUCCUCCUCGUCGUCCUCU   482 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC9271223 (LOC9271223), mRNA	uncharacterized LOC9271223(LOC9271223)	coding protein	psRNATarget
XM_015755882.1	ncRNA:21   AGGAGGAGGAGCAGCAAGAGC   1   ||||||||||||||||*|||* targets:234   UCCUCCUCCUCGUCGUCCUCC   254 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC107278891 (LOC107278891), mRNA	uncharacterized LOC107278891(LOC107278891)	coding protein	psRNATarget
AK108019.1	ncRNA:21   AGGAGGAGGAGCAGCAAGAGC   1   ||||||||||||||||*|||* targets:116   UCCUCCUCCUCGUCGUCCUCU   136 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:002-136-A01, full insert sequence	NA	coding protein	psRNATarget
XM_015762325.1	ncRNA:21   AGGAGGAGGAGCAGCAAGAGC   1   ||||||*|||||||||*|||| targets:106   UCCUCCGCCUCGUCGUCCUCG   126 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group putative protein phosphatase 2C 76 (LOC4350799), transcript variant X1, mRNA	putative protein phosphatase 2C 76(LOC4350799)	coding protein	psRNATarget
XM_015762326.1	ncRNA:21   AGGAGGAGGAGCAGCAAGAGC   1   ||||||*|||||||||*|||| targets:106   UCCUCCGCCUCGUCGUCCUCG   126 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group putative protein phosphatase 2C 76 (LOC4350799), transcript variant X2, mRNA	putative protein phosphatase 2C 76(LOC4350799)	coding protein	psRNATarget
XM_015759878.1	ncRNA:21   AGGAGGAGGAGCAGCAAGAGC   1   |||||*|||*||||||||||| targets:2288   UCCUCGUCCGCGUCGUUCUCG   2308 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group probable inactive leucine-rich repeat receptor-like protein kinase At1g66830 (LOC4350326), mRNA	probable inactive leucine-rich repeat receptor-like protein kinase At1g66830(LOC4350326)	coding protein	psRNATarget
XM_015764932.1	ncRNA:21   AGGAGGAGGAGCAGCAAGAGC   1   |=||||||||||||||*|||* targets:6   UUCUCCUCCUCGUCGUCCUCC   26 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group protein LOL2 (LOC4352767), mRNA	protein LOL2(LOC4352767)	coding protein	psRNATarget
XM_015793670.1	ncRNA:21   AGGAGGAGGAGCAGCAAGAGC   1   |=||||||||||||||*|||* targets:373   UUCUCCUCCUCGUCGUCCUCC   393 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4344536 (LOC4344536), mRNA	uncharacterized LOC4344536(LOC4344536)	coding protein	psRNATarget
XM_015757550.1	ncRNA:21   AGGAGGAGGAGCAGCAAGAGC   1   ||||*||||||||||*||||| targets:183   UCCUGCUCCUCGUCGCUCUCG   203 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group cytochrome P450 89A2 (LOC4349105), mRNA	cytochrome P450 89A2(LOC4349105)	coding protein	psRNATarget
XM_015765488.1	ncRNA:21   AGGAGGAGGAGCAGCAAGAGC   1   |||*||||||||||*|||||| targets:154   UCCACCUCCUCGUCCUUCUCG   174 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group L-Ala-D/L-amino acid epimerase (LOC4325471), mRNA	L-Ala-D/L-amino acid epimerase(LOC4325471)	coding protein	psRNATarget
AK105773.1	ncRNA:21   AGGAGGAGGAGCAGCAAGAGC   1   ||||*||||||||||*||||| targets:45   UCCUGCUCCUCGUCGCUCUCG   65 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:001-202-F01, full insert sequence	NA	coding protein	psRNATarget
AK121651.1	ncRNA:21   AGGAGGAGGAGCAGCAAGAGC   1   ||||*||||||||||*||||| targets:41   UCCUGCUCCUCGUCGCUCUCG   61 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:J033061A12, full insert sequence	NA	coding protein	psRNATarget
AK058378.1	ncRNA:21   AGGAGGAGGAGCAGCAAGAGC   1   |||*||||||||||*|||||| targets:79   UCCACCUCCUCGUCCUUCUCG   99 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:001-014-H01, full insert sequence	NA	coding protein	psRNATarget