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BaseInfo

ncRNA ID	novel_osa_miR2880
Species	Oryza sativa
Class	miRNA
Genome position	Chr4:25638846-25638921 [+]
Reference genome	IRGSP-1.0
Source	SRR2040382
Length	20
Mature sequence(if miRNA)	57 - UCACAUCCGAUACUAGGUUG - 76
Stem-loop(if miRNA)	--      G   A         C      ----    UCC   AUCUAG AUC GGUGUGACA AUCUUG    UAUG   A   |||||| ||| ||||||||| ||||||    ||||   UGGAUC UAG CUACACUGU UAGGAU    AUAC   G GU      A   C         A      CUUG    UUA
Stem-loop sequence	AUCUAGGAUCAGGUGUGACACAUCUUGUAUGUCCAGAUUCAUAGUUCUAGGAUAUGUCACAUCCGAUACUAGGUUG

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
CT832625.1	ncRNA:20   GUUGGAUCAUAGCCUACACU   1   |||=||||*||||||||||| targets:960   CAAUCUAGGAUCGGAUGUGA   979 Target Full Sequence	2.5	Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA103G17, full insert sequence	NA	coding protein	psRNATarget
AK119669.1	ncRNA:20   GUUGGAUCAUAGCCUACACU   1   |||=||||*||||||||||| targets:960   CAAUCUAGGAUCGGAUGUGA   979 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:002-149-H06, full insert sequence	NA	coding protein	psRNATarget
AK119584.1	ncRNA:20   GUUGGAUCAUAGCCUACACU   1   |||=||||*||||||||||| targets:965   CAAUCUAGGAUCGGAUGUGA   984 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:002-117-C06, full insert sequence	NA	coding protein	psRNATarget
AK069814.1	ncRNA:20   GUUGGAUCAUAGCCUACACU   1   |||=||||*||||||||||| targets:961   CAAUCUAGGAUCGGAUGUGA   980 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:J023031G07, full insert sequence	NA	coding protein	psRNATarget
CT832623.1	ncRNA:20   GUUGGAUCAUAGCCUACACU   1   |||=||||*||||||||||| targets:955   CAAUCUAGGAUCGGAUGUGA   974 Target Full Sequence	2.5	Oryza sativa (indica cultivar-group) cDNA clone:OSIGCEA053E04, full insert sequence	NA	coding protein	psRNATarget
CT832624.1	ncRNA:20   GUUGGAUCAUAGCCUACACU   1   |||=||||*||||||||||| targets:960   CAAUCUAGGAUCGGAUGUGA   979 Target Full Sequence	2.5	Oryza sativa (indica cultivar-group) cDNA clone:OSIGCEA053I23, full insert sequence	NA	coding protein	psRNATarget
XM_015783830.1	ncRNA:20   GUUGGAUCAUAGCCUACACU   1   |||=||||*||||||||||| targets:1070   CAAUCUAGGAUCGGAUGUGA   1089 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4337946 (LOC4337946), mRNA	uncharacterized LOC4337946(LOC4337946)	coding protein	psRNATarget
AK107145.1	ncRNA:20   GUUGGAUCAUAGCCUACACU   1   |||=||||||||||||||*| targets:1206   CAAUCUAGUAUCGGAUGUAA   1225 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:002-124-D07, full insert sequence	NA	coding protein	psRNATarget
XM_015782471.1	ncRNA:20   GUUGGAUCAUAGCCUACACU   1   |||=||||||||||||||*| targets:1246   CAAUCUAGUAUCGGAUGUAA   1265 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4339433 (LOC4339433), mRNA	uncharacterized LOC4339433(LOC4339433)	coding protein	psRNATarget
AK288995.1	ncRNA:20   GUUGGAUCAUAGCCUACACU   1   |||=|||||||||*|||||| targets:456   CAAUCUAGUAUCGAAUGUGA   475 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J090088A20, full insert sequence	NA	coding protein	psRNATarget