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BaseInfo

ncRNA ID novel_osa_miR2879
Species Oryza sativa
Class miRNA
Genome position Chr4:18620955-18621128 [+]
Reference genome IRGSP-1.0
Source SRR2040382;SRR2040388;SRR2040391;SRR2040405;SRR2040411
Length 24
Mature sequence(if miRNA) 1 - AUCGAGACAUGUCCAAUACUCCCU - 24
Stem-loop(if miRNA) --                             C   A              -AA    -AC          ACA        A    CC
  AUCGAGACAUGUCCAAUACUCCCUCCGUC UAA AAGAAUCAACCUAG   AGGA   CCCUCCUAGG   AUGUAUGU GACA  C
  ||||||||||||||||||||||||||||| ||| ||||||||||||||   ||||   ||||||||||   |||||||| ||||
  UGGCUCUGUACAGGUUAUGAGGGAGGUAG GUU UUCUUAGUUGGAUC   UCCU   GGGAGGAUCC   UACAUACA CUGU  C
GA                             C   C              CUC    ACU          AAC        C    AU
Stem-loop sequence AUCGAGACAUGUCCAAUACUCCCUCCGUCCUAAAAAGAAUCAACCUAGAAAGGAACCCCUCCUAGGACAAUGUAUGUAGACACCCCUAUGUCCACAUACAUCAACCUAGGAGGGUCAUCCUCUCCUAGGUUGAUUCUUCUUGCGAUGGAGGGAGUAUUGGACAUGUCUCGGUAG