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BaseInfo

ncRNA ID	novel_osa_miR2878
Species	Oryza sativa
Class	miRNA
Genome position	Chr3:10157344-10157530 [-]
Reference genome	IRGSP-1.0
Source	SRR2040382;SRR2040388;SRR2040402;SRR1738210;SRR1738227
Length	24
Mature sequence(if miRNA)	1 - UUAGUGUGGAACUAAACACAGCCU - 24
Stem-loop(if miRNA)	---G                       ----             G     U                 G          AUGUGUAUAGGA  G    GAUG     UGUGUUUAGUUCCACGUUAAAAU    UGAAAGUUUGACU AAAUU AAAGUUUGAAGAAAAAA UCGGAAGUUU            AA UUUU    U     |||||||||||||||||||||||    ||||||||||||| ||||| ||||||||||||||||| ||||||||||            || ||||     ACACAAAUCAAGGUGUGAUUUUA    ACUUUCAAACUGA UUUAA UUUCAAACUUUUUUUUU AGCCUUCAAA            UU AAAA    G UCCG                       UAAU             A     C                 -          -----------G  G    GGUA
Stem-loop sequence	GUGUGUUUAGUUCCACGUUAAAAUUGAAAGUUUGACUGAAAUUUAAAGUUUGAAGAAAAAAGUCGGAAGUUUAUGUGUAUAGGAAAGUUUUGAUGUGAUGGAAAAGUUGAAACUUCCGAUUUUUUUUUCAAACUUUCAAUUUAAGUCAAACUUUCAUAAUAUUUUAGUGUGGAACUAAACACAGCCU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_015769012.1	ncRNA:24   UCCGACACAAAUCAAGGUGUGAUU   1   |||||||||||||||||||=|||| targets:3275   AGGCUGUGUUUAGUUCCACGCUAA   3298 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group disease resistance protein RGA2-like (LOC107277690), transcript variant X1, mRNA	disease resistance protein RGA2-like(LOC107277690)	coding protein	psRNATarget
AK065926.1	ncRNA:24   UCCGACACAAAUCAAGGUGUGAUU   1   |||||||||||||||||||=|||| targets:2075   AGGCUGUGUUUAGUUCCACGCUAA   2098 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA clone:J013050P04, full insert sequence	NA	coding protein	psRNATarget
CT832855.1	ncRNA:24   UCCGACACAAAUCAAGGUGUGAUU   1   |||||||||||||||||||=|||| targets:2037   AGGCUGUGUUUAGUUCCACGCUAA   2060 Target Full Sequence	1.5	Oryza sativa (indica cultivar-group) cDNA clone:OSIGCFA228E21, full insert sequence	NA	coding protein	psRNATarget
XM_015759918.1	ncRNA:24   UCCGACACAAAUCAAGGUGUGAUU   1   =||||||||||||||||||=|||| targets:1906   GGGCUGUGUUUAGUUCCACGCUAA   1929 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group F-box/LRR-repeat protein At3g59190 (LOC9271146), mRNA	F-box/LRR-repeat protein At3g59190(LOC9271146)	coding protein	psRNATarget