Search result

BaseInfo

ncRNA ID	novel_osa_miR2877
Species	Oryza sativa
Class	miRNA
Genome position	Chr6:14890586-14890776 [+]
Reference genome	IRGSP-1.0
Source	SRR1555747;SRR1556020
Length	24
Mature sequence(if miRNA)	168 - AGAGUAGUUUGACUUUGACCAAAG - 191
Stem-loop(if miRNA)	--                           U           U         -           U    C    A  AAUAUA    GA        UC   UUGGUUAAAGUCAAACUAUUCUAAGUU GAUUAAUUUUG AGAAAAAAG UAGUAAUAUUU UAAC UAAG CA      UUAU  AAAUUUAU  A   ||||||||||||||||||||||||||| ||||||||||| ||||||||| ||||||||||| |||| |||| ||      ||||  ||||||||   AACCAGUUUCAGUUUGAUGAGAUUCAA CUGAUUGAGAU UUUUUUUUC AUCAUUAUAAA GUUG AUUC GU      AGUA  UUUAAAUA  A GA                           C           -         U           U    U    -  -AUCAA    -A        UU
Stem-loop sequence	UUGGUUAAAGUCAAACUAUUCUAAGUUUGAUUAAUUUUGUAGAAAAAAGUAGUAAUAUUUUUAACCUAAGACAAAUAUAUUAUGAAAAUUUAUUCAAUUAUAAAUUUAAUGAAACUAUGCUUAUGUUGUAAAUAUUACUAUCUUUUUUUUUAGAGUUAGUCCAACUUAGAGUAGUUUGACUUUGACCAAAG

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
AK288527.1	ncRNA:24   GAAACCAGUUUCAGUUUGAUGAGA   1   |||||||=|||||||||||||||| targets:595   CUUUGGUUAAAGUCAAACUACUCU   618 Target Full Sequence	1.0	Oryza sativa Japonica Group cDNA, clone: J090044J18, full insert sequence	NA	coding protein	psRNATarget
LQ236558.1	ncRNA:24   GAAACCAGUUUCAGUUUGAUGAGA   1   |||||||||||*|||||||||||| targets:21   CUUUGGUCAAAUUCAAACUACUCU   44 Target Full Sequence	1.5	Sequence 2553 from Patent EP2985353	NA	coding protein	psRNATarget
JB164889.1	ncRNA:24   GAAACCAGUUUCAGUUUGAUGAGA   1   |||||||||||*|||||||||||| targets:21   CUUUGGUCAAAUUCAAACUACUCU   44 Target Full Sequence	1.5	Sequence 2553 from Patent EP2559767	NA	coding protein	psRNATarget
HI404428.1	ncRNA:24   GAAACCAGUUUCAGUUUGAUGAGA   1   |||||||||||*|||||||||||| targets:21   CUUUGGUCAAAUUCAAACUACUCU   44 Target Full Sequence	1.5	Sequence 2553 from Patent EP2074227	NA	coding protein	psRNATarget
JB164583.1	ncRNA:24   GAAACCAGUUUCAGUUUGAUGAGA   1   |||*||||||||||||||||||=| targets:21   CUUGGGUCAAAGUCAAACUACUUU   44 Target Full Sequence	1.5	Sequence 2247 from Patent EP2559767	NA	coding protein	psRNATarget
HI404122.1	ncRNA:24   GAAACCAGUUUCAGUUUGAUGAGA   1   |||*||||||||||||||||||=| targets:21   CUUGGGUCAAAGUCAAACUACUUU   44 Target Full Sequence	1.5	Sequence 2247 from Patent EP2074227	NA	coding protein	psRNATarget
LQ236252.1	ncRNA:24   GAAACCAGUUUCAGUUUGAUGAGA   1   |||*||||||||||||||||||=| targets:21   CUUGGGUCAAAGUCAAACUACUUU   44 Target Full Sequence	1.5	Sequence 2247 from Patent EP2985353	NA	coding protein	psRNATarget
XM_015773578.1	ncRNA:24   GAAACCAGUUUCAGUUUGAUGAGA   1   *||||*|||||||||||||||||| targets:290   AUUUGUUCAAAGUCAAACUACUCU   313 Target Full Sequence	1.0	PREDICTED: Oryza sativa Japonica Group putative F-box protein At2g02030 (LOC9271925), transcript variant X3, mRNA	putative F-box protein At2g02030(LOC9271925)	coding protein	psRNATarget