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BaseInfo

ncRNA ID novel_osa_miR2874
Species Oryza sativa
Class miRNA
Genome position Chr3:22218590-22218694 [-]
Reference genome IRGSP-1.0
Source SRR2040382
Length 24
Mature sequence(if miRNA) 1 - AAAUACUAGAAUAACUUACAUUGU - 24
Stem-loop(if miRNA) --    C    C                 C               AUAA    A
  AAUG AAGU AUUUUAGUAUUUUCUAU UUUAUAUUGAUGUUA    AUCU G
  |||| |||| ||||||||||||||||| |||||||||||||||    ||||
  UUAC UUCA UAAGAUCAUAAAAGGUG AAAUAUAACUACAAU    UAGA A
UG    A    A                 U               ---A    C
Stem-loop sequence AAUGCAAGUCAUUUUAGUAUUUUCUAUCUUUAUAUUGAUGUUAAUAAAUCUAGACAGAUAUAACAUCAAUAUAAAUGUGGAAAAUACUAGAAUAACUUACAUUGU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
AK288952.1
ncRNA:24   UGUUACAUUCAAUAAGAUCAUAAA   1
  |||||||||||*||||||||||||
targets:250   ACAAUGUAAGUCAUUCUAGUAUUU   273

1.5 Oryza sativa Japonica Group cDNA, clone: J090083K12, full insert sequence NA coding protein psRNATarget
XM_015768952.1
ncRNA:24   UGUUACAUUCAAUAAGAUCAUAAA   1
  |||||||||||*||||||||||||
targets:599   ACAAUGUAAGUAAUUCUAGUAUUU   622

1.5 PREDICTED: Oryza sativa Japonica Group uncharacterized LOC9269313 (LOC9269313), mRNA uncharacterized LOC9269313(LOC9269313) coding protein psRNATarget
AK289050.1
ncRNA:24   UGUUACAUUCAAUAAGAUCAUAAA   1
  |||||||||||||||||||*||||
targets:4362   ACAAUGUAAGUUAUUCUAGCAUUU   4385

1.5 Oryza sativa Japonica Group cDNA, clone: J090092O13, full insert sequence NA coding protein psRNATarget
XM_015767758.1
ncRNA:24   UGUUACAUUCAAUAAGAUCAUAAA   1
  |||||||||||*||||||||||||
targets:3741   ACAAUGUAAGUCAUUCUAGUAUUU   3764

1.5 PREDICTED: Oryza sativa Japonica Group transcription factor bHLH68 (LOC4325885), transcript variant X3, mRNA transcription factor bHLH68(LOC4325885) coding protein psRNATarget
XM_015772126.1
ncRNA:24   UGUUACAUUCAAUAAGAUCAUAAA   1
  ||||||||||*|||||||||||||
targets:2299   ACAAUGUAAGGUAUUCUAGUAUUU   2322

1.0 PREDICTED: Oryza sativa Japonica Group probable polygalacturonase At1g80170 (LOC4328189), mRNA probable polygalacturonase At1g80170(LOC4328189) coding protein psRNATarget
AK106802.1
ncRNA:24   UGUUACAUUCAAUAAGAUCAUAAA   1
  ||||||||||*|||||||||||||
targets:1882   ACAAUGUAAGGUAUUCUAGUAUUU   1905

1.0 Oryza sativa Japonica Group cDNA clone:002-116-B12, full insert sequence NA coding protein psRNATarget
XM_015767363.1
ncRNA:24   UGUUACAUUCAAUAAGAUCAUAAA   1
  |||||||||||||||||||*||||
targets:1713   ACAAUGUAAGUUAUUCUAGCAUUU   1736

1.5 PREDICTED: Oryza sativa Japonica Group CAAX prenyl protease 1 homolog (LOC4330318), mRNA CAAX prenyl protease 1 homolog(LOC4330318) coding protein psRNATarget
AK064965.1
ncRNA:24   UGUUACAUUCAAUAAGAUCAUAAA   1
  |||||||||||*||||||||||||
targets:1624   ACAAUGUAAGUCAUUCUAGUAUUU   1647

1.5 Oryza sativa Japonica Group cDNA clone:J013001B01, full insert sequence NA coding protein psRNATarget
AK102210.1
ncRNA:24   UGUUACAUUCAAUAAGAUCAUAAA   1
  |||||||||||||||||||*||||
targets:1617   ACAAUGUAAGUUAUUCUAGCAUUU   1640

1.5 Oryza sativa Japonica Group cDNA clone:J033087I04, full insert sequence NA coding protein psRNATarget
AK060498.1
ncRNA:24   UGUUACAUUCAAUAAGAUCAUAAA   1
  |||||||||||||||||||*||||
targets:1252   ACAAUGUAAGUUAUUCUAGCAUUU   1275

1.5 Oryza sativa Japonica Group cDNA clone:001-017-D02, full insert sequence NA coding protein psRNATarget
XM_015764295.1
ncRNA:24   UGUUACAUUCAAUAAGAUCAUAAA   1
  |||||||||||||||||||*||||
targets:719   ACAAUGUAAGUUAUUCUAGCAUUU   742

1.5 PREDICTED: Oryza sativa Japonica Group 54S ribosomal protein L37, mitochondrial (LOC4351876), mRNA 54S ribosomal protein L37, mitochondrial(LOC4351876) coding protein psRNATarget
AK064502.1
ncRNA:24   UGUUACAUUCAAUAAGAUCAUAAA   1
  |||||||||||*||||||||||||
targets:495   ACAAUGUAAGUAAUUCUAGUAUUU   518

1.5 Oryza sativa Japonica Group cDNA clone:002-111-D06, full insert sequence NA coding protein psRNATarget
CT828989.1
ncRNA:24   UGUUACAUUCAAUAAGAUCAUAAA   1
  ||||||||||*|||||||||||||
targets:217   ACAAUGUAAGGUAUUCUAGUAUUU   240

1.0 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSA050N17, full insert sequence NA coding protein psRNATarget
AK070012.1
ncRNA:24   UGUUACAUUCAAUAAGAUCAUAAA   1
  =||||||||||*||||||||||||
targets:2331   GCAAUGUAAGUCAUUCUAGUAUUU   2354

1.5 Oryza sativa Japonica Group cDNA clone:J023037B16, full insert sequence NA coding protein psRNATarget
CT833789.1
ncRNA:24   UGUUACAUUCAAUAAGAUCAUAAA   1
  |=|||||||||*||||||||||||
targets:357   AUAAUGUAAGUCAUUCUAGUAUUU   380

1.5 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSN032F14, full insert sequence NA coding protein psRNATarget
CT833788.1
ncRNA:24   UGUUACAUUCAAUAAGAUCAUAAA   1
  |=|||||||||*||||||||||||
targets:358   AUAAUGUAAGUCAUUCUAGUAUUU   381

1.5 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSA058L20, full insert sequence NA coding protein psRNATarget
AK102104.1
ncRNA:24   UGUUACAUUCAAUAAGAUCAUAAA   1
  |||||*|||||*||||||||||||
targets:633   ACAAUAUAAGUCAUUCUAGUAUUU   656

2.5 Oryza sativa Japonica Group cDNA clone:J033084B10, full insert sequence NA coding protein psRNATarget
AK067404.1
ncRNA:24   UGUUACAUUCAAUAAGAUCAUAAA   1
  |||||*|||||*||||||||||||
targets:631   ACAAUAUAAGUCAUUCUAGUAUUU   654

2.5 Oryza sativa Japonica Group cDNA clone:J013106F19, full insert sequence NA coding protein psRNATarget
CT834624.1
ncRNA:24   UGUUACAUUCAAUAAGAUCAUAAA   1
  |||||*|||||||||||||*||||
targets:1074   ACAAUAUAAGUUAUUCUAGCAUUU   1097

2.5 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSA040F18, full insert sequence NA coding protein psRNATarget
XM_015794898.1
ncRNA:24   UGUUACAUUCAAUAAGAUCAUAAA   1
  |||||*|||||*||||||||||||
targets:518   ACAAUAUAAGUCAUUCUAGUAUUU   541

2.5 PREDICTED: Oryza sativa Japonica Group putative EG45-like domain containing protein 1 (LOC9267730), mRNA putative EG45-like domain containing protein 1(LOC9267730) coding protein psRNATarget
AK242586.1
ncRNA:24   UGUUACAUUCAAUAAGAUCAUAAA   1
  |||||*|||||*||||||||||||
targets:507   ACAAUAUAAGUCAUUCUAGUAUUU   530

2.5 Oryza sativa Japonica Group cDNA, clone: J090010P05, full insert sequence NA coding protein psRNATarget
CT829098.1
ncRNA:24   UGUUACAUUCAAUAAGAUCAUAAA   1
  |||||||||*|||||||||*||||
targets:751   ACAAUGUAAAUUAUUCUAGCAUUU   774

2.5 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCPI025D23, full insert sequence NA coding protein psRNATarget
CT835159.1
ncRNA:24   UGUUACAUUCAAUAAGAUCAUAAA   1
  |*|||*|||||*||||||||||||
targets:214   AGAAUUUAAGUCAUUCUAGUAUUU   237

2.5 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCPI015J24, full insert sequence NA coding protein psRNATarget
AK288474.1
ncRNA:24   UGUUACAUUC-AAUAAGAUCAUAAA   1
  |=||**||||-||||||||||||||
targets:2399   AUAAAAUAAGAUUAUUCUAGUAUUU   2423

3.0 Oryza sativa Japonica Group cDNA, clone: J090038A02, full insert sequence NA coding protein psRNATarget
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