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BaseInfo

ncRNA ID	novel_osa_miR2872
Species	Oryza sativa
Class	miRNA
Genome position	Chr3:25961698-25961918 [-]
Reference genome	IRGSP-1.0
Source	SRR2040382;SRR2040390;SRR2040392;SRR2040393;SRR2040394;SRR2040400;SRR2040401;SRR2040409;SRR2040411;SRR3123645;SRR1738226;SRR1738227
Length	24
Mature sequence(if miRNA)	1 - AAUCUAUGUUUAAUACUCUAAAUU - 24
Stem-loop(if miRNA)	--                  C C    UAC     CC   CC     CUU GA      -         AUC               CGC       UUGA   -U  GA   U   UUUGGAGUAUUAAACAUA A UAAU   AAAAC  AUU  AUAAG   G  CUAAUU GCGAGACGA   UUUUGAGUCUAAUUA   CAUAAUU    CAA  GU  UGC A   |||||||||||||||||| | ||||   |||||  |||  |||||   |  |||||| |||||||||   |||||||||||||||   |||||||    |||  ||  |||   AAAUCUCAUAAUUUGUAU U AUUA   UUUUG  UAA  UAUUU   C  GAUUAG CGCUCUGCU   AAAAUUCGGAUUAAU   GUAUUAA    GUU  CA  AUG C UU                  C A    -UU     AU   AA     ACU UC      G         -AA               UAA       --UA   UU  -A   A
Stem-loop sequence	UUUGGAGUAUUAAACAUACACUAAUUACAAAACCCAUUCCAUAAGCUUGGACUAAUUGCGAGACGAAUCUUUUGAGUCUAAUUACGCCAUAAUUUUGACAAUGUGAUGCUACAGUAAACUUUUGAUAAUUAUGAAUUAAUUAGGCUUAAAAAAUCGUCUCGCGGAUUAGCUCUCAUUUAUAAAAUUAGUUUUUUAUUAAUCUAUGUUUAAUACUCUAAAUU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_015781196.1	ncRNA:24   UUAAAUCUCAUAAUUUGUAUCUAA   1   ||||||||||||||||||||||*| targets:2009   AAUUUAGAGUAUUAAACAUAGACU   2032 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group GATA transcription factor 6 (LOC4336532), mRNA	GATA transcription factor 6(LOC4336532)	coding protein	psRNATarget
AK288948.1	ncRNA:24   UUAAAUCUCAUAAUUUGUAUCUAA   1   ||||||||||||||||||||||*| targets:2591   AAUUUAGAGUAUUAAACAUAGACU   2614 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA, clone: J090083I09, full insert sequence	NA	coding protein	psRNATarget
AK288241.1	ncRNA:24   UUAAAUCUCAUAAUUUGUAUCUAA   1   ||||||||||||||||||||||*| targets:529   AAUUUAGAGUAUUAAACAUAGACU   552 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA, clone: J090013L13, full insert sequence	NA	coding protein	psRNATarget
AK100185.1	ncRNA:24   UUAAAUCUCAUAAUUUGUAUCUAA   1   |||||=||||||||||||||*||| targets:667   AAUUUGGAGUAUUAAACAUACAUU   690 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:J023031M16, full insert sequence	NA	coding protein	psRNATarget
AK102033.1	ncRNA:24   UUAAAUCUCAUAAUUUGUAUCUAA   1   |||||=||||||||||||||||*| targets:287   AAUUUGGAGUAUUAAACAUAGACU   310 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:J033081B10, full insert sequence	NA	coding protein	psRNATarget
AK240978.1	ncRNA:24   UUAAAUCUCAUAAUUUGUAUCUAA   1   ||||-|||||=|||||||||||*| targets:353   AAUU-AGAGUGUUAAACAUAGACU   375 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J065048J02, full insert sequence	NA	coding protein	psRNATarget