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BaseInfo

ncRNA ID	novel_osa_miR2870
Species	Oryza sativa
Class	miRNA
Genome position	Chr6:13060782-13060858 [+]
Reference genome	IRGSP-1.0
Source	SRR1555747;SRR1556020
Length	24
Mature sequence(if miRNA)	54 - AGUUAUGGAUUAAUUAGGCUUAAA - 77
Stem-loop(if miRNA)	--G   A                    C     GA   U    GAG CUAAUUAAUCCAUGAUUAGC UAUGU  UGC A    ||| |||||||||||||||||||| |||||  |||    UUC GAUUAAUUAGGUAUUGAUCG GUACA  AUG U AAA   G                    U     -A   A
Stem-loop sequence	GGAGACUAAUUAAUCCAUGAUUAGCCUAUGUGAUGCUAUAGUAAACAUGUGCUAGUUAUGGAUUAAUUAGGCUUAAA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
AK288241.1	ncRNA:24   AAAUUCGGAUUAAUUAGGUAUUGA   1   ||||||||||||||||||||||=| targets:602   UUUAAGCCUAAUUAAUCCAUAAUU   625 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA, clone: J090013L13, full insert sequence	NA	coding protein	psRNATarget
XM_015781196.1	ncRNA:24   AAAUUCGGAUUAAUUAGGUAUUGA   1   ||||||||||||||||||||||=| targets:2082   UUUAAGCCUAAUUAAUCCAUAAUU   2105 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group GATA transcription factor 6 (LOC4336532), mRNA	GATA transcription factor 6(LOC4336532)	coding protein	psRNATarget
AK073850.1	ncRNA:24   AAAUUCGGAUUAAUUAGGUAUUGA   1   ||||||||||||||||||||||=| targets:1587   UUUAAGCCUAAUUAAUCCAUAAUU   1610 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA clone:J033073F11, full insert sequence	NA	coding protein	psRNATarget
XM_015767213.1	ncRNA:24   AAAUUCGGAUUAAUUAGGUAUUGA   1   ||||||||||||||||||||||=| targets:1872   UUUAAGCCUAAUUAAUCCAUAAUU   1895 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group beclin-1-like protein (LOC4324394), transcript variant X1, mRNA	beclin-1-like protein(LOC4324394)	coding protein	psRNATarget
XM_015767222.1	ncRNA:24   AAAUUCGGAUUAAUUAGGUAUUGA   1   ||||||||||||||||||||||=| targets:1854   UUUAAGCCUAAUUAAUCCAUAAUU   1877 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group beclin-1-like protein (LOC4324394), transcript variant X2, mRNA	beclin-1-like protein(LOC4324394)	coding protein	psRNATarget
AK101033.1	ncRNA:24   AAAUUCGGAUUAAUUAGGUAUUGA   1   ||||||||||||||||||||||=| targets:1855   UUUAAGCCUAAUUAAUCCAUAAUU   1878 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA clone:J023150N19, full insert sequence	NA	coding protein	psRNATarget
XM_015788312.1	ncRNA:24   AAAUUCGGAUUAAUUAGGUAUUGA   1   ||||||||||||||||||||||=| targets:1604   UUUAAGCCUAAUUAAUCCAUAAUU   1627 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group serine/arginine-rich splicing factor SR45a (LOC4342102), transcript variant X1, mRNA	serine/arginine-rich splicing factor SR45a(LOC4342102)	coding protein	psRNATarget
CT833304.1	ncRNA:24   AAAUUCGGAUUAAUUAGGUAUUGA   1   ||||||||||||||||||||||=| targets:1254   UUUAAGCCUAAUUAAUCCAUAAUU   1277 Target Full Sequence	1.5	Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSN010D02, full insert sequence	NA	coding protein	psRNATarget
AK103177.1	ncRNA:24   AAAUUCGGAUUAAUUAGGUAUUGA   1   ||||||||||||||||||||||=| targets:1248   UUUAAGCCUAAUUAAUCCAUAAUU   1271 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA clone:J033121H17, full insert sequence	NA	coding protein	psRNATarget
AK100421.1	ncRNA:24   AAAUUCGGAUUAAUUAGGUAUUGA   1   |||||||=||||||||||||||=| targets:1449   UUUAAGCUUAAUUAAUCCAUAAUU   1472 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:J023088B04, full insert sequence	NA	coding protein	psRNATarget
AK120728.1	ncRNA:24   AAAUUCGGAUUAAUUAGGUAUUGA   1   |||||||=||||||||||||||=| targets:1421   UUUAAGCUUAAUUAAUCCAUAAUU   1444 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:J023003A06, full insert sequence	NA	coding protein	psRNATarget
AK288868.1	ncRNA:24   AAAUUCGGAUUAAUUAGGUAUUGA   1   |||||*||||||||||||||||=| targets:4687   UUUAAACCUAAUUAAUCCAUAAUU   4710 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J090078E01, full insert sequence	NA	coding protein	psRNATarget
CT837623.1	ncRNA:24   AAAUUCGGAUUAAUUAGGUAUUGA   1   **|=||||||||||||||||||=| targets:588   AAUGAGCCUAAUUAAUCCAUAAUU   611 Target Full Sequence	1.5	Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSN019I07, full insert sequence	NA	coding protein	psRNATarget
JB164388.1	ncRNA:24   AAAUUCGGAUUAAUUAGGUAUUGA   1   *|||*|||||||||||||||*||| targets:21   AUUACGCCUAAUUAAUCCAUCACU   44 Target Full Sequence	1.5	Sequence 2052 from Patent EP2559767	NA	coding protein	psRNATarget
HI403927.1	ncRNA:24   AAAUUCGGAUUAAUUAGGUAUUGA   1   *|||*|||||||||||||||*||| targets:21   AUUACGCCUAAUUAAUCCAUCACU   44 Target Full Sequence	1.5	Sequence 2052 from Patent EP2074227	NA	coding protein	psRNATarget
LQ236057.1	ncRNA:24   AAAUUCGGAUUAAUUAGGUAUUGA   1   *|||*|||||||||||||||*||| targets:21   AUUACGCCUAAUUAAUCCAUCACU   44 Target Full Sequence	1.5	Sequence 2052 from Patent EP2985353	NA	coding protein	psRNATarget