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BaseInfo

ncRNA ID	novel_osa_miR2868
Species	Oryza sativa
Class	miRNA
Genome position	Chr2:18536390-18536532 [-]
Reference genome	IRGSP-1.0
Source	SRR2040382
Length	24
Mature sequence(if miRNA)	120 - UAGAUUCCGUCUGUAAACUGCGAG - 143
Stem-loop(if miRNA)	--      CC  C      C        AA    A            AA     C   -A    ----A    UA   UAGAUU  GU UGUAAA UGCGAGAU  AUUU UUAAGUCUAAUU  UCCAU AUU  GCAA     UGUU  C   ||||||  || |||||| ||||||||  |||| ||||||||||||  ||||| |||  ||||     ||||   AUCUAA  CA ACAUUU ACGCUCUG  UAAA AAUUCGGAUUAA  AGGUA UAA  UGUU     ACGA  U GU      --  C      A        CC    A            CG     C   AC    ACACC    UG
Stem-loop sequence	UAGAUUCCGUCUGUAAACUGCGAGAUAAAUUUAUUAAGUCUAAUUAAUCCAUCAUUAGCAAAUGUUUACUGUAGCACCACAUUGUCAAAUCAUGGAGCAAUUAGGCUUAAAAAAUCCGUCUCGCAAUUUACACACAAUCUAUG

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
AK099913.1	ncRNA:24   GAGCGUCAAAUGUCUGCCUUAGAU   1   ||||||||||||||=||||||||| targets:807   CUCGCAGUUUACAGGCGGAAUCUA   830 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA clone:J013116E13, full insert sequence	NA	coding protein	psRNATarget
AK288682.1	ncRNA:24   GAGCGUCAAAUGUCUGCCUUAGAU   1   ||||||||||||||=||||||||| targets:447   CUCGCAGUUUACAGGCGGAAUCUA   470 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA, clone: J090059I11, full insert sequence	NA	coding protein	psRNATarget
AK064922.1	ncRNA:24   GAGCGUCAAAUGUCUGCCUUAGAU   1   ||||||||||||||=||||||||| targets:2050   CUCGCAGUUUACAGGCGGAAUCUA   2073 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA clone:J013000N12, full insert sequence	NA	coding protein	psRNATarget
AK067578.1	ncRNA:24   GAGCGUCAAAUGUCUGCCUUAGAU   1   ||||||||||||||=||||||||= targets:1774   CUCGCAGUUUACAGGCGGAAUCUG   1797 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:J013110M15, full insert sequence	NA	coding protein	psRNATarget
AM778048.1	ncRNA:24   GAGCGUCAAAUGUCUGCCUUAGAU   1   ||||||||||||||=||||||||= targets:77   CUCGCAGUUUACAGGCGGAAUCUG   100 Target Full Sequence	2.5	Oryza sativa Japonica Group mRNA for putative pre-mRNA-splicing factor cwc-22 (Os12g15420 gene), cultivar Azucena	NA	coding protein	psRNATarget
XM_015764825.1	ncRNA:24   GAGCGUCAAAUGUCUGCCUUAGAU   1   ||||||||||||||=||||||||= targets:77   CUCGCAGUUUACAGGCGGAAUCUG   100 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group pre-mRNA-splicing factor CWC22 homolog (LOC4351904), mRNA	pre-mRNA-splicing factor CWC22 homolog(LOC4351904)	coding protein	psRNATarget