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BaseInfo

ncRNA ID	novel_osa_miR2866
Species	Oryza sativa
Class	miRNA
Genome position	Chr2:28647539-28647708 [+]
Reference genome	IRGSP-1.0
Source	SRR2040382;SRR2040392
Length	23
Mature sequence(if miRNA)	1 - UUUCUGUGUCCAACUUUGACUGU - 23
Stem-loop(if miRNA)	--    U         -         C        A    UUUUU      UUCUUAUUUUCAUUGUU      -U     AA    AU   U   UUUC GUGUCCAAC UUUGACUGU CGUUUUAU UGAA     UUAUAA                 GUUAGA  GAUAA  CAUG  UAA A   |||| ||||||||| ||||||||| |||||||| ||||     ||||||                 ||||||  |||||  ||||  |||   AAAG UACAGGUUG AAAUUGGCA GCAGAAUA ACUU     AAUAUU                 UAAUUU  CUGUU  GUGC  AUU U CA    -         C         A        A    -UUUU      ------------UUUUU      UU     CA    GU   U
Stem-loop sequence	UUUCUGUGUCCAACUUUGACUGUCCGUUUUAUAUGAAUUUUUUUAUAAUUCUUAUUUUCAUUGUUGUUAGAUGAUAAAACAUGAUUAAUAUUUUAUGCGUGACUUGUCUUUUUAAUUUUUUUUAUAAUUUUUUCAAAUAAGACGAACGGUUAAACGUUGGACAUGAAAAC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_015761929.1	ncRNA:23   UGUCAGUUU-CAACCUGUGUCUUU   1   ||=||||||-|||||||||||||| targets:27   ACGGUCAAACGUUGGACACAGAAA   50 Target Full Sequence	2.0	PREDICTED: Oryza sativa Japonica Group disease resistance protein RGA2 (LOC4350187), transcript variant X2, mRNA	disease resistance protein RGA2(LOC4350187)	coding protein	psRNATarget
AK242553.1	ncRNA:23   UGUCAGUUUCAACCUGUGUCUUU   1   |||||||||*||||||||=|||| targets:325   ACAGUCAAAAUUGGACACGGAAA   347 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J080319L22, full insert sequence	NA	coding protein	psRNATarget
LQ236032.1	ncRNA:23   UGUCAGUUUCAACCUGUGUCUUU   1   ||=*|=||||||||||||||||| targets:163   ACGAUUAAAGUUGGACACAGAAA   185 Target Full Sequence	1.0	Sequence 2027 from Patent EP2985353	NA	coding protein	psRNATarget
HI403902.1	ncRNA:23   UGUCAGUUUCAACCUGUGUCUUU   1   ||=*|=||||||||||||||||| targets:163   ACGAUUAAAGUUGGACACAGAAA   185 Target Full Sequence	1.0	Sequence 2027 from Patent EP2074227	NA	coding protein	psRNATarget
JB164363.1	ncRNA:23   UGUCAGUUUCAACCUGUGUCUUU   1   ||=*|=||||||||||||||||| targets:163   ACGAUUAAAGUUGGACACAGAAA   185 Target Full Sequence	1.0	Sequence 2027 from Patent EP2559767	NA	coding protein	psRNATarget
XM_015791114.1	ncRNA:23   UGUCAGUUUCAACCUGUGUCUUU   1   |=|||||||*||||||||=|||| targets:4109   AUAGUCAAAAUUGGACACGGAAA   4131 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group protein NETWORKED 2A (LOC4344401), transcript variant X2, mRNA	protein NETWORKED 2A(LOC4344401)	coding protein	psRNATarget
XM_015791113.1	ncRNA:23   UGUCAGUUUCAACCUGUGUCUUU   1   |=|||||||*||||||||=|||| targets:4141   AUAGUCAAAAUUGGACACGGAAA   4163 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group protein NETWORKED 2A (LOC4344401), transcript variant X1, mRNA	protein NETWORKED 2A(LOC4344401)	coding protein	psRNATarget
AK100615.1	ncRNA:23   UGUCAGUUUCAACCUGUGUCUUU   1   |=|||||||*||||||||=|||| targets:4218   AUAGUCAAAAUUGGACACGGAAA   4240 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:J023108B01, full insert sequence	NA	coding protein	psRNATarget
AK288606.1	ncRNA:23   UGUCAGUUUCAACCUGUGUCUUU   1   ||=*|=||||||||||||||||| targets:4155   ACGAUUAAAGUUGGACACAGAAA   4177 Target Full Sequence	1.0	Oryza sativa Japonica Group cDNA, clone: J090052P16, full insert sequence	NA	coding protein	psRNATarget
HI403580.1	ncRNA:23   UGUCAGUUUCAACCUGUGUCUUU   1   ||=*|=|||*||||||||||||| targets:164   ACGAUUAAAAUUGGACACAGAAA   186 Target Full Sequence	2.0	Sequence 1705 from Patent EP2074227	NA	coding protein	psRNATarget
JB164041.1	ncRNA:23   UGUCAGUUUCAACCUGUGUCUUU   1   ||=*|=|||*||||||||||||| targets:164   ACGAUUAAAAUUGGACACAGAAA   186 Target Full Sequence	2.0	Sequence 1705 from Patent EP2559767	NA	coding protein	psRNATarget
LQ235710.1	ncRNA:23   UGUCAGUUUCAACCUGUGUCUUU   1   ||=*|=|||*||||||||||||| targets:164   ACGAUUAAAAUUGGACACAGAAA   186 Target Full Sequence	2.0	Sequence 1705 from Patent EP2985353	NA	coding protein	psRNATarget