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BaseInfo

ncRNA ID	novel_osa_miR2861
Species	Oryza sativa
Class	miRNA
Genome position	Chr1:6560551-6560740 [-]
Reference genome	IRGSP-1.0
Source	SRR2040382;SRR2857733;SRR2857734;SRR2857736
Length	21
Mature sequence(if miRNA)	170 - UUGGUCAAAGUUAAACUGUUU - 190
Stem-loop(if miRNA)	--U    C               CAA    AA             CA               AUA   - -   AU   U       -AAU    AUU    UGGU AAAGUUAAACUGUUU   GUUU  UUAAGUUUAUAGA  AAUAUAGUAAUAUUU   UUG C CAA  UAG UUUAUUA    AAUA   A    |||| |||||||||||||||   ||||  |||||||||||||  |||||||||||||||   ||| | |||  ||| |||||||    ||||    AUCA UUUCGGUUUGAUAAA   CAAA  GGUUCAAAUAUCU  UUAUAUCAUUAUAAA   AAC G GUU  AUU AAAUAAU    UUAU   G GAU    A               AUA    CA             UA               ---   U A   CU   U       AUUU    AUA
Stem-loop sequence	UUGGUCAAAGUUAAACUGUUUCAAGUUUAAUUAAGUUUAUAGACAAAUAUAGUAAUAUUUAUAUUGCCAAAUUAGUUUUAUUAAAUAAUAAUUAGAUAUAUUUUUAUAAUAAAUUUAUCUUGAGUCAAAAAUAUUACUAUAUUAUUCUAUAAACUUGGACAAACAUAAAAUAGUUUGGCUUUAACUAUAG

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_015759791.1	ncRNA:21   UUUGUCAAAUUGAAACUGGUU   1   ||=|||||||||||||||||| targets:1022   AAGCAGUUUAACUUUGACCAA   1042 Target Full Sequence	1.0	PREDICTED: Oryza sativa Japonica Group putative HVA22-like protein g (LOC9269077), transcript variant X2, mRNA	putative HVA22-like protein g(LOC9269077)	coding protein	psRNATarget
XM_015759790.1	ncRNA:21   UUUGUCAAAUUGAAACUGGUU   1   ||=|||||||||||||||||| targets:1036   AAGCAGUUUAACUUUGACCAA   1056 Target Full Sequence	1.0	PREDICTED: Oryza sativa Japonica Group putative HVA22-like protein g (LOC9269077), transcript variant X1, mRNA	putative HVA22-like protein g(LOC9269077)	coding protein	psRNATarget
AK243189.1	ncRNA:21   UUUGUCAAAUUGAAACUGGUU   1   ||=|||||||||||||||||| targets:956   AAGCAGUUUAACUUUGACCAA   976 Target Full Sequence	1.0	Oryza sativa Japonica Group cDNA, clone: J100039G08, full insert sequence	NA	coding protein	psRNATarget
CT837874.1	ncRNA:21   UUUGUCAAAUUGAAACUGGUU   1   ||=||||||=||||||||||| targets:313   AAGCAGUUUGACUUUGACCAA   333 Target Full Sequence	2.5	Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSN062A18, full insert sequence	NA	coding protein	psRNATarget
AK243096.1	ncRNA:21   UUUGUCAAAUUGAAACUGGUU   1   |||=|||||=||||||||||| targets:1995   AAAUAGUUUGACUUUGACCAA   2015 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J100024A13, full insert sequence	NA	coding protein	psRNATarget
XM_015756152.1	ncRNA:21   UUUGUCAAAUUGAAACUGGUU   1   |||=|||||=||||||||||| targets:1966   AAAUAGUUUGACUUUGACCAA   1986 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group basic blue protein (LOC4347927), mRNA	basic blue protein(LOC4347927)	coding protein	psRNATarget
XM_015757710.1	ncRNA:21   UUUGUCAAAUUGAAACUGGUU   1   |||=|||||=||||||||||| targets:35   AAAUAGUUUGACUUUGACCAA   55 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC107278283 (LOC107278283), mRNA	uncharacterized LOC107278283(LOC107278283)	coding protein	psRNATarget
AK288994.1	ncRNA:21   UUUGUCAAAUUGAAACUGGUU   1   |||=|||||=||||||||||| targets:1794   AAAUAGUUUGACUUUGACCAA   1814 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J090087P03, full insert sequence	NA	coding protein	psRNATarget