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BaseInfo

ncRNA ID novel_osa_miR2860
Species Oryza sativa
Class miRNA
Genome position Chr1:8954145-8954212 [-]
Reference genome IRGSP-1.0
Source SRR2040382
Length 24
Mature sequence(if miRNA) 45 - AUUUAUGUUGAUGUUAAUGAAUCU - 68
Stem-loop(if miRNA) --                  G          GAU
  AUUUAUGUUGAUGUUAAU AAUCUAGAUA   U
  |||||||||||||||||| ||||||||||
  UAAGUAUAACUGCAAUUA UUAGAUCUGU   U
UA                  A          AUA
Stem-loop sequence AUUUAUGUUGAUGUUAAUGAAUCUAGAUAGAUUUAUAUGUCUAGAUUAAUUAACGUCAAUAUGAAUAU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
CT835159.1
ncRNA:24   UCUAAGUAAUUGUAGUUGUAUUUA   1
  |||||||||||||||||=||||||
targets:269   AGAUUCAUUAACAUCAAUAUAAAU   292

1.5 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCPI015J24, full insert sequence NA coding protein psRNATarget
AK240884.1
ncRNA:24   UCUAAGUAAUUGUAGUUGUAUUUA   1
  |||||||||||||||||=||||||
targets:481   AGAUUCAUUAACAUCAAUAUAAAU   504

1.5 Oryza sativa Japonica Group cDNA, clone: J065028F04, full insert sequence NA coding protein psRNATarget
CT829098.1
ncRNA:24   UCUAAGUAAUUGUAGUUGUAUUUA   1
  |||||||||||||||||=||||||
targets:785   AGAUUCAUUAACAUCAAUAUAAAU   808

1.5 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCPI025D23, full insert sequence NA coding protein psRNATarget
XM_015761241.1
ncRNA:24   UCUAAGUAAUUGUAGUUGUAUUUA   1
  |||||||||||||||||=||||||
targets:861   AGAUUCAUUAACAUCAAUAUAAAU   884

1.5 PREDICTED: Oryza sativa Japonica Group dirigent protein 1 (LOC4350074), mRNA dirigent protein 1(LOC4350074) coding protein psRNATarget
CT837490.1
ncRNA:24   UCUAAGUAAUUGUAGUUGUAUUUA   1
  |||||||||||||||||=||||||
targets:900   AGAUUCAUUAACAUCAAUAUAAAU   923

1.5 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA109F07, full insert sequence NA coding protein psRNATarget
XM_015792529.1
ncRNA:24   UCUAAGUAAUUGUAGUUGUAUUUA   1
  |||||||||||||||||=||||||
targets:7   AGAUUCAUUAACAUCAAUAUAAAU   30

1.5 PREDICTED: Oryza sativa Japonica Group dehydrodolichyl diphosphate synthase 6 (LOC4343863), transcript variant X1, mRNA dehydrodolichyl diphosphate synthase 6(LOC4343863) coding protein psRNATarget
AK060965.1
ncRNA:24   UCUAAGUAAUUGUAGUUGUAUUUA   1
  |||||||||||||||||=||||||
targets:1596   AGAUUCAUUAACAUCAAUAUAAAU   1619

1.5 Oryza sativa Japonica Group cDNA clone:006-202-B11, full insert sequence NA coding protein psRNATarget
XM_015764593.1
ncRNA:24   UCUAAGUAAUUGUAGUUGUAUUUA   1
  |||||||||||||||||=||||||
targets:1596   AGAUUCAUUAACAUCAAUAUAAAU   1619

1.5 PREDICTED: Oryza sativa Japonica Group UDP-glycosyltransferase 91C1 (LOC4352520), mRNA UDP-glycosyltransferase 91C1(LOC4352520) coding protein psRNATarget
AK121202.1
ncRNA:24   UCUAAGUAAUUGUAGUUGUAUUUA   1
  |||||||||||||||||=||||||
targets:1596   AGAUUCAUUAACAUCAAUAUAAAU   1619

1.5 Oryza sativa Japonica Group cDNA clone:J023087K24, full insert sequence NA coding protein psRNATarget
AK065951.1
ncRNA:24   UCUAAGUAAUUGUAGUUGUAUUUA   1
  ||||||||||||||||||||=|||
targets:2766   AGAUUCAUUAACAUCAACAUGAAU   2789

1.5 Oryza sativa Japonica Group cDNA clone:J013045C05, full insert sequence NA coding protein psRNATarget
AK288390.1
ncRNA:24   UCUAAGUAAUUGUAGUUGUAUUUA   1
  |||||||||||||||||=||||||
targets:564   AGAUUCAUUAACAUCAAUAUAAAU   587

1.5 Oryza sativa Japonica Group cDNA, clone: J090027G18, full insert sequence NA coding protein psRNATarget
XM_015780917.1
ncRNA:24   UCUAAGUAAUUGUAGUUGUAUUUA   1
  |||||||||||||||||=||||||
targets:4743   AGAUUCAUUAACAUCAAUAUAAAU   4766

1.5 PREDICTED: Oryza sativa Japonica Group DExH-box ATP-dependent RNA helicase DExH7, chloroplastic (LOC9267691), transcript variant X2, mRNA DExH-box ATP-dependent RNA helicase DExH7, chloroplastic(LOC9267691) coding protein psRNATarget
XM_015780918.1
ncRNA:24   UCUAAGUAAUUGUAGUUGUAUUUA   1
  |||||||||||||||||=||||||
targets:4792   AGAUUCAUUAACAUCAAUAUAAAU   4815

1.5 PREDICTED: Oryza sativa Japonica Group DExH-box ATP-dependent RNA helicase DExH7, chloroplastic (LOC9267691), transcript variant X3, mRNA DExH-box ATP-dependent RNA helicase DExH7, chloroplastic(LOC9267691) coding protein psRNATarget
XM_015780916.1
ncRNA:24   UCUAAGUAAUUGUAGUUGUAUUUA   1
  |||||||||||||||||=||||||
targets:4801   AGAUUCAUUAACAUCAAUAUAAAU   4824

1.5 PREDICTED: Oryza sativa Japonica Group DExH-box ATP-dependent RNA helicase DExH7, chloroplastic (LOC9267691), transcript variant X1, mRNA DExH-box ATP-dependent RNA helicase DExH7, chloroplastic(LOC9267691) coding protein psRNATarget
AK121342.1
ncRNA:24   UCUAAGUAAUUGUAGUUGUAUUUA   1
  |||||||||||||||||=||||||
targets:4653   AGAUUCAUUAACAUCAAUAUAAAU   4676

1.5 Oryza sativa Japonica Group cDNA clone:J023121A11, full insert sequence NA coding protein psRNATarget
XM_015789040.1
ncRNA:24   UCUAAGUAAUUGUAGUUGUAUUUA   1
  |||||||||||||||||=||||||
targets:4819   AGAUUCAUUAACAUCAAUAUAAAU   4842

1.5 PREDICTED: Oryza sativa Japonica Group uncharacterized LOC9266525 (LOC9266525), transcript variant X1, mRNA uncharacterized LOC9266525(LOC9266525) coding protein psRNATarget
AK241345.1
ncRNA:24   UCUAAGUAAUUGUAGUUGUAUUUA   1
  ||||||||||=||||||=||||||
targets:1190   AGAUUCAUUAGCAUCAAUAUAAAU   1213

2.5 Oryza sativa Japonica Group cDNA, clone: J065148C06, full insert sequence NA coding protein psRNATarget
XM_015765624.1
ncRNA:24   UCUAAGUAAUUGUAGUUGUAUUUA   1
  ||||||||||=||||||=||||||
targets:1197   AGAUUCAUUAGCAUCAAUAUAAAU   1220

2.5 PREDICTED: Oryza sativa Japonica Group probably inactive leucine-rich repeat receptor-like protein kinase At5g48380 (LOC4324918), mRNA probably inactive leucine-rich repeat receptor-like protein kinase At5g48380(LOC4324918) coding protein psRNATarget
CT837739.1
ncRNA:24   UCUAAGUAAUUGUAGUUGUAUUUA   1
  ||||||||||=||||||=||||||
targets:1441   AGAUUCAUUAGCAUCAAUAUAAAU   1464

2.5 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCEA048L02, full insert sequence NA coding protein psRNATarget
XM_015758389.1
ncRNA:24   UCUAAGUAAUUGUAGUUGUAUUUA   1
  ||||||=||||||||||=||||||
targets:2189   AGAUUCGUUAACAUCAAUAUAAAU   2212

2.5 PREDICTED: Oryza sativa Japonica Group protein NRT1/ PTR FAMILY 8.3-like (LOC107276819), mRNA protein NRT1/ PTR FAMILY 8.3-like(LOC107276819) coding protein psRNATarget
XM_015793336.1
ncRNA:24   UCUAAGUAAUUGUAGUUGUAUUUA   1
  ||||||||||=||||||=||||||
targets:1625   AGAUUCAUUAGCAUCAAUAUAAAU   1648

2.5 PREDICTED: Oryza sativa Japonica Group transcription factor bHLH112 (LOC9271688), transcript variant X3, mRNA transcription factor bHLH112(LOC9271688) coding protein psRNATarget
XM_015793335.1
ncRNA:24   UCUAAGUAAUUGUAGUUGUAUUUA   1
  ||||||||||=||||||=||||||
targets:1778   AGAUUCAUUAGCAUCAAUAUAAAU   1801

2.5 PREDICTED: Oryza sativa Japonica Group transcription factor bHLH112 (LOC9271688), transcript variant X2, mRNA transcription factor bHLH112(LOC9271688) coding protein psRNATarget
XM_015793334.1
ncRNA:24   UCUAAGUAAUUGUAGUUGUAUUUA   1
  ||||||||||=||||||=||||||
targets:1796   AGAUUCAUUAGCAUCAAUAUAAAU   1819

2.5 PREDICTED: Oryza sativa Japonica Group transcription factor bHLH112 (LOC9271688), transcript variant X1, mRNA transcription factor bHLH112(LOC9271688) coding protein psRNATarget
XM_015795143.1
ncRNA:24   UCUAAGUAAUUGUAGUUGUAUUUA   1
  ||*||||||||||||||=||||||
targets:1338   AGUUUCAUUAACAUCAAUAUAAAU   1361

1.5 PREDICTED: Oryza sativa Japonica Group tetraketide alpha-pyrone reductase 1 (LOC4346033), mRNA tetraketide alpha-pyrone reductase 1(LOC4346033) coding protein psRNATarget
AK070012.1
ncRNA:24   UCUAAGUAAUUGUAGUUGUAUUUA   1
  |*|||||||||||||||=||||||
targets:2392   AUAUUCAUUAACAUCAAUAUAAAU   2415

1.5 Oryza sativa Japonica Group cDNA clone:J023037B16, full insert sequence NA coding protein psRNATarget
XM_015756761.1
ncRNA:24   UCUAAGUAAUUGUAGUUGUAUUUA   1
  *|||||||*||||||||=||||||
targets:3389   UGAUUCAUCAACAUCAAUAUAAAU   3412

2.5 PREDICTED: Oryza sativa Japonica Group G-type lectin S-receptor-like serine/threonine-protein kinase At5g35370 (LOC4347249), mRNA G-type lectin S-receptor-like serine/threonine-protein kinase At5g35370(LOC4347249) coding protein psRNATarget
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